Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02246 ATGCCCTTTTCCTTCTGCAACATCTTGTTACTTTTTCACCTTTTCTACTTTCTTCTTCTTCCTTTTAACAACCTTTCTCTCTCTAGAATGAACAACAACAACATCATCAACACTGGTTGGATGGAAGAAAGAGAAAGTGGAAACACCACTCCTTCTTCATCTGCTTCTACTTTTCTCCAAAACAAACAACAGTTTGCTGCTTTCAAAACCATGCTTGAAATCGATGATGATGAATGGTACATGAAAGACATGGCTTTTCCACCTAACTTGGATACTGTTTTACTCAACAACACTGTTGATTCTGTTTCTTCTTCTTCGTGTTCACCTTCTTCATCTGTTTTCAATGCACTTGATCCTTCACTTTCGAATCTTCAGTGTTTTCTTCCTCAGAATCAGAAACCTGTTGATACTCTTTCTTCTCTTCTCAACACCCCTTTTGAGATTCCTTCTGAATTTGGTTATCTTGAACCTCAAGGTTCAGCATTACCTGCTTCTTCAAATATGGGTAGTTTGGTTGATTTCAATGCTACTGAGATGATGAGCTTGCCCCATTTGCCTCAAACTAGCAATGGCTTCATGGGGTTTCAGAACTCGGAAGAGGGTTCTGGAAAGTCGCTGTTTTTGAACAGGTCCAAGGTTTTGAAACCGCTTGATTCTTTGCCTCCTTCTGGGACACAACCTACTTTGTTTCAGAAGAGAGCGGCATTGAGAAAGAACATGGGGAAGGGTGAAGTTGGGGAAGAGAGTGATAAGAAAAGGAAGATGAATGGTGGAGATGAAATTGAAGATTTGAGTTTTGATGGGTCTGGTTTGAACTATGATTCTGATGATTTGGCTGAGAGTAATGGCAAAAATGGTGGAAATGCTTCCAATGGGAACAGTACTGTCACTGATCAGAAAGGGAAGAAGAAAGGAATGCCTGCTAAGAATTTGATGGCCGAGCGTCGCCGGAGGAAGAAGCTCAATGATAGGCTCTATATGCTGAGGTCTGTTGTTCCCAAGATTAGCAAAATGGATAGGGCTTCAATTCTTGGGGATGCAATTGAGTATCTGAAGGAACTTCTGCAAAGGATCAATGACCTTCATAATGAGTTGGAATCAACACCTGCTGGATCTTCACTGACACCTGCTTCAAGCTACCATCCGTTGACACCGACTGCATCTTCGTTGCCGAGCCATATCAAAGAAGAACTGTGTCCCAGCTCACTGCCAAGCCCCAATGGCCAACCTGCCAGGGTTGAGGTTCGGTTGCGTGAAGGAAGAGCCGTAAATATCCACATGTTTTGTGCTCGCAAACCTGGTCTGTTACTCTCAACCATGAGGGCTTTGGATAGCCTTGGATTAGACATTCAGCAAGCTGTTATAAGCTGTTTCAATGGATTTGCTATGGACATCTTCAAAGCTGAGCAATGCAAAGAAGATCAAGATGTTCATCCGGAGCAAATCAAAGCAGTACTGTTGGATTCAGCTGGTTTTAATGGCATGATCTAA 1491 0.4245 MPFSFCNILLLFHLFYFLLLPFNNLSLSRMNNNNIINTGWMEERESGNTTPSSSASTFLQNKQQFAAFKTMLEIDDDEWYMKDMAFPPNLDTVLLNNTVDSVSSSSCSPSSSVFNALDPSLSNLQCFLPQNQKPVDTLSSLLNTPFEIPSEFGYLEPQGSALPASSNMGSLVDFNATEMMSLPHLPQTSNGFMGFQNSEEGSGKSLFLNRSKVLKPLDSLPPSGTQPTLFQKRAALRKNMGKGEVGEESDKKRKMNGGDEIEDLSFDGSGLNYDSDDLAESNGKNGGNASNGNSTVTDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPAGSSLTPASSYHPLTPTASSLPSHIKEELCPSSLPSPNGQPARVEVRLREGRAVNIHMFCARKPGLLLSTMRALDSLGLDIQQAVISCFNGFAMDIFKAEQCKEDQDVHPEQIKAVLLDSAGFNGMI 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02246 496 Pfam Helix-loop-helix DNA-binding domain 312 354 IPR011598 GO:0046983
Vivi3g02246 496 CDD ACT_UUR-ACR-like 425 466 - -
Vivi3g02246 496 MobiDBLite consensus disorder prediction 239 261 - -
Vivi3g02246 496 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 196 493 - -
Vivi3g02246 496 Coils Coil 344 368 - -
Vivi3g02246 496 MobiDBLite consensus disorder prediction 239 318 - -
Vivi3g02246 496 MobiDBLite consensus disorder prediction 275 300 - -
Vivi3g02246 496 Gene3D - 297 369 IPR036638 GO:0046983
Vivi3g02246 496 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 308 373 IPR036638 GO:0046983
Vivi3g02246 496 CDD bHLH_AtAMS_like 308 373 - -
Vivi3g02246 496 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 305 354 IPR011598 GO:0046983
Vivi3g02246 496 SMART finulus 311 360 IPR011598 GO:0046983
Vivi3g02246 496 MobiDBLite consensus disorder prediction 366 387 - -
Vivi3g02246 496 MobiDBLite consensus disorder prediction 302 318 - -
Vivi3g02246 496 FunFam BHLH transcription factor 301 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02246 Vivi-Chr3 36959455 36962213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02246 71 469 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 53.613 3.47e-119 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi3g02246 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02246 - - cave:132174704 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02246 3 36959455 36962213 Vivi3g02246 3 36959455 36962213 ECH