Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02240 ATGTCAAATCAGCAACAACTCCGCCGTGAATCATCCGAGCAACAACTCCGCCGTGAAGCACCTGAGCAACAACACCGCCACCGTGAAGCACCATCCCCAACCACTATCTGTCCGCATAACCAGATGAAATTGCAGGATAAAGACCAATTCGACTCGCCCCAAACCGTTTCTCAATGGCTTCGATCAGTTCGCAAACGCACTTCCAATTCCGGTTTCCCTCGCTCTTCTTCCACCATACCTTTTAGTTTTGGAGAGGATGCAGAAATTGACATGGTTCATGATATTAGTGTGAGGGATAGGCTTGGTAAAGCTGAAATGTTGGACATTGACTCCGGCTCCTTTTCTTGGGACACGCTCTCTTCACTTCACCACATTGAGCACACCAGTAGCAATCAACATTCGGAGGATGAAGTCAATAGATCTCTTGAGATCACAGTAAATTCTGGAGGGGTTGTCTTCTTTGCCCTTTTCAATGTAGATGGGAGCAATGATGCTTCTCCAAAAGAAGCAGCAGCGGTCATAAAGATATCTTCGTCAAGAATGGCAACACAGTCTGAACGACTTGGATATGAATTCGCCAAATGGTTGGGAGTCCAAGCTCCACAGGCTAGAGTCATTCACAATACAAGTTTAGAATGGCTCCAAATTAAGAAAGCTGCCGAAAAGGCAAGGGATGCAGCAAGTTGTGAGAGTAATGTAATTGGTGAAACAACATGTTCTGAACTCTTGGAAGCACTCGAGCTTAGCCGGTGTGTCTTGTTTATGAGTTATGTACATGGCTCACCTTTACTTGAAAGCTCTAGTTCATTTGAATCAAGGGATTCTGCAGAAAGAACGTCTGCAGCGCTTGGTAGGATAATGATGTTAGATCTTGTTATCAGAAATGAAGATAGGCTTCCATGCCGTCAACTTAGATGGCGTGGGAACCCTGCAAATTTGTTATTAACTGAAAAAGCAATCCCTTCACATTTAGATACAATAGGAGAAACCTTTGATTTGGCAATGAACCGATATGAGCCCGGGGTGGTTAGTAGGCTTGAGAAAAAAAAAAGATCTACTTCAAGATCGTGTTCTCATGATAATAGAATAAGAACACAAAGCTCTCACCTTTTACATATAAGAGAATCATCCAATTATACATGCCTTAAAAGTCAAATGTCAAGAGAATCAATATTTACAGGCTTCAACATTGTGGCTATTGACTCTGGTGTTCCACGCCGTCCTCCTGCTGTAAAACGTGTCGCTGATCAAGTCAGCTATCCTAAGTTGGTTGAGTTGGTACTAAATAGTTCTGAGTTTTCTTCTCGCCTGTTACATGATATAACCGGAGGGAAATTAGGAAGTCCTCCCTTAGAAGATATAACTTTAACAATTGATGTACAAGGAAGTGTTGTAACATCAATAGTACAGGAGTTCCGCAGTGGTTTTCGTGCTGCTCTTAGGGATCTGCAAGGATTTCATATATTCTTACTTACACTTCACCAGAAACTTGATAACTTGTTAAGATTGTTTAATAATACTATGAGCAAAGTATCATTGGGGGAGTCTGAAAATGGAGATTCACCTTCACCAACTATTGGTAAGTGCCTCTCTTCAACAAGTAAGGGGAGATTTTCTAATGATAGCCATCGAGATTTTAGTGATTCAGATTCACAAAACTCTGCTCCAAGGGCATTGTCATCCTCAGGCAATAGAAATGTTTGTGACTCTGTTTCTCCTATGTCAAGAGAAGGTTGCCATGGAAAATCCTCCAAAGGGGGTGTGGAGCCATTGCATGATTCCCGTTTTACAGCTAAGCTCCGTGAGTTCCATAAATTTGCCAAGGTTGATGCAGAATCTTATAAAGAATTAGAACATTGGAATGAAATGCTCAAAAATGATGCTATCAAGTTGTGCCAGGAGAACAATTTTAATTCAGGATTTTTTGAAGGGAGTGATAGCAACACTGTCGTTGATGCATATGAATTGAAGATTAGACTTGAGCATATCCTTGAAAGGATTGCATTGATATCTGAGGCTGCAAATACAGAGAGACCATCTGCTATTACTAATTATTTGTTCATCGGTGGAGTACTATCTGCAAGATCTATACACACAATGCAACACTTAGGAATCACTCATATTTTGTGTTTGTGTACTAACGAAATTGGACAATCAGATTCTCAATTTGCTGATATATTCACTTACAAAAATTTCTCTGTATGTGACACTGAGAATACTAACATCAGCATCTTATTTGACGAAGCTTGTGATTTTATAGAAAATGTTGAAAGAGCGGGCCAGAGAATTCTAGTTCATTGCTTCGAAGGGAAAAGTAGAAGTGTCACAGTAGTCCTGGCTTACTTGATGCTAAGAAAGAATTTCACATTATTAGAAGCTTGGAATACTATGAAAAAAGTTCACCGTAGAGCACAACCGAATGACGGTTTTGGAAAGATCTTACAGGAACTTGATCAAAAACTGCATGGGAAAGTTTCAATGGAGTGGCGGCAGCGGCGGAGACCAACCATGAAAGTTTGTCCAATATGTGGGAAGAATGCTGGATTGAGTAGTAGTTCACTTAAGCTCCATCTTCAAAAATCACATAAAAGACTATCATCAGGGAGTGTAGATAGTGCCATGACAATGGAAATCCAAAAGACACTAACCTCTTTGAATATCAGCTGTGGTGGGAATATGAGCCCCACACACAGGCAAGCTCGCTCAATGACAGATTAA 2718 0.408 MSNQQQLRRESSEQQLRREAPEQQHRHREAPSPTTICPHNQMKLQDKDQFDSPQTVSQWLRSVRKRTSNSGFPRSSSTIPFSFGEDAEIDMVHDISVRDRLGKAEMLDIDSGSFSWDTLSSLHHIEHTSSNQHSEDEVNRSLEITVNSGGVVFFALFNVDGSNDASPKEAAAVIKISSSRMATQSERLGYEFAKWLGVQAPQARVIHNTSLEWLQIKKAAEKARDAASCESNVIGETTCSELLEALELSRCVLFMSYVHGSPLLESSSSFESRDSAERTSAALGRIMMLDLVIRNEDRLPCRQLRWRGNPANLLLTEKAIPSHLDTIGETFDLAMNRYEPGVVSRLEKKKRSTSRSCSHDNRIRTQSSHLLHIRESSNYTCLKSQMSRESIFTGFNIVAIDSGVPRRPPAVKRVADQVSYPKLVELVLNSSEFSSRLLHDITGGKLGSPPLEDITLTIDVQGSVVTSIVQEFRSGFRAALRDLQGFHIFLLTLHQKLDNLLRLFNNTMSKVSLGESENGDSPSPTIGKCLSSTSKGRFSNDSHRDFSDSDSQNSAPRALSSSGNRNVCDSVSPMSREGCHGKSSKGGVEPLHDSRFTAKLREFHKFAKVDAESYKELEHWNEMLKNDAIKLCQENNFNSGFFEGSDSNTVVDAYELKIRLEHILERIALISEAANTERPSAITNYLFIGGVLSARSIHTMQHLGITHILCLCTNEIGQSDSQFADIFTYKNFSVCDTENTNISILFDEACDFIENVERAGQRILVHCFEGKSRSVTVVLAYLMLRKNFTLLEAWNTMKKVHRRAQPNDGFGKILQELDQKLHGKVSMEWRQRRRPTMKVCPICGKNAGLSSSSLKLHLQKSHKRLSSGSVDSAMTMEIQKTLTSLNISCGGNMSPTHRQARSMTD 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02240 905 MobiDBLite consensus disorder prediction 512 590 - -
Vivi3g02240 905 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 678 823 IPR029021 -
Vivi3g02240 905 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 22 904 IPR035010 GO:0004721|GO:0009737|GO:0043622
Vivi3g02240 905 ProSiteProfiles Dual specificity protein phosphatase domain profile. 678 823 IPR020422 GO:0006470|GO:0008138
Vivi3g02240 905 FunFam Dual specificity protein phosphatase PHS1 650 824 - -
Vivi3g02240 905 MobiDBLite consensus disorder prediction 34 55 - -
Vivi3g02240 905 Pfam Dual specificity phosphatase, catalytic domain 693 818 IPR000340 GO:0008138|GO:0016311
Vivi3g02240 905 Gene3D - 263 514 IPR036940 -
Vivi3g02240 905 Pfam Actin-fragmin kinase, catalytic 95 333 IPR015275 -
Vivi3g02240 905 MobiDBLite consensus disorder prediction 512 537 - -
Vivi3g02240 905 CDD DSP 679 816 - -
Vivi3g02240 905 SMART dsp_5 678 820 IPR020422 GO:0006470|GO:0008138
Vivi3g02240 905 SUPERFAMILY Protein kinase-like (PK-like) 58 418 IPR011009 -
Vivi3g02240 905 MobiDBLite consensus disorder prediction 551 571 - -
Vivi3g02240 905 Gene3D Protein tyrosine phosphatase superfamily 661 833 IPR029021 -
Vivi3g02240 905 MobiDBLite consensus disorder prediction 1 55 - -
Vivi3g02240 905 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 747 799 IPR000387 GO:0016311|GO:0016791
Vivi3g02240 905 MobiDBLite consensus disorder prediction 11 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02240 Vivi-Chr3 36872913 36878196 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02240 25 890 Protein tyrosine phosphatase (PTP) family AT5G23720 59.487 0.0 972
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02240 K14165 - gmx:102661225 1156.74