Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02239 ATGTCAAATCAGCAACAACTCCGCCGTGAATCATCCGAGCAACAACTCCGCCGTGAAGCACCTGAGCAACAACACCGCCACCGTGAAGCACCATCCCCAACCACTATCTGTCCGCATAACCAGGATAAAGACCAATTCGACTCGCCCCAAACCGTTTCTCAATGGCTTCGATCAGTTCGCAAACGCACTTCCAATTCCGGTTTCCCTCGCTCTTCTTCCACCATACCTTTTAGTGTGAGGGATAGGCTTGGTAAAGCTGAAATGTTGGACATTGACTCCGGCTCCTTTTCTTGGGACACGCTCTCTTCACTTCACCACATTGAGCACACCAGTAGCAATCAACATTCGGAGGATGAAGTCAATAGATCTCTTGAGATCACAGTAAATTCTGGAGGGGTTGTCTTCTTTGCCCTTTTCAATGTAGATGGGAGCAATGATGCTTCTCCAAAAGAAGCAGCAGCGGTCATAAAGATATCTTCGTCAAGAATGGCAACACAGTCTGAACGACTTGGATATGAATTCGCCAAATGGTTGGGAGTCCAAGCTCCACAGGCTAGAGTCATTCACAATACAAGTTTAGAATGGCTCCAAATTAAGAAAGCTGCCGAAAAGGCAAGGGATGCAGCAAGTTGTGAGAGTAATGTAATTGGTGAAACAACATGTTCTGAACTCTTGGAAGCACTCGAGCTTAGCCGGTGTGTCTTGTTTATGAGTTATGTACATGGCTCACCTTTACTTGAAAGCTCTAGTTCATTTGAATCAAGGGATTCTGCAGAAAGAACGTCTGCAGCGCTTGGTAGGATAATGATGTTAGATCTTGTTATCAGAAATGAAGATAGGCTTCCATGCCGTCAACTTAGATGGCGTGGGAACCCTGCAAATTTGTTATTAACTGAAAAAGCAATCCCTTCACATTTAGATACAATAGGAGAAACCTTTGATTTGGCAATGAACCGATATGAGCCCGGGGTGGTTAGTAGGCTTGAGAAAAAAAAAAGATCTACTTCAAGATCGTGTTCTCATGATAATAGAATAAGAACACAAAGCTCTCACCTTTTACATATAAGAGAATCATCCAATTATACATGCCTTAAAAGTCAAATGTCAAGAGAATCAATATTTACAGGCTTCAACATTGTGGCTATTGACTCTGGTGTTCCACGCCGTCCTCCTGCTGTAAAACGTGTCGCTGATCAAGTCAGCTATCCTAAGTTGGTTGAGTTGGTACTAAATAGTTCTGAGTTTTCTTCTCGCCTGTTACATGATATAACCGGAGGGAAATTAGGAAGTCCTCCCTTAGAAGATATAACTTTAACAATTGATGTACAAGGAAGTGTTGTAACATCAATAGTACAGGAGTTCCGCAGTGGTTTTCGTGCTGCTCTTAGGGATCTGCAAGGATTTCATATATTCTTACTTACACTTCACCAGAAACTTGATAACTTGTTAAGATTGTTTAATAATACTATGAGCAAAGTATCATTGGGGGAGTCTGAAAATGGAGATTCACCTTCACCAACTATTGGTAAGTGCCTCTCTTCAACAAGTAAGGGGAGATTTTCTAATGATAGCCATCGAGATTTTAGTGATTCAGATTCACAAAACTCTGCTCCAAGGGCATTGTCATCCTCAGGCAATAGAAATGTTTGTGACTCTGTTTCTCCTATGTCAAGAGAAGGTTGCCATGGAAAATCCTCCAAAGGGGGTGTGGAGCCATTGCATGATTCCCGTTTTACAGCTAAGCTCCGTGAGTTCCATAAATTTGCCAAGGTTGATGCAGAATCTTATAAAGAATTAGAACATTGGAATGAAATGCTCAAAAATGATGCTATCAAGTTGTGCCAGGAGAACAATTTTAATTCAGGATTTTTTGAAGGGAGTGATAGCAACACTGTCGTTGATGCATATGAATTGAAGATTAGACTTGAGCATATCCTTGAAAGGATTGCATTGATATCTGAGGCTGCAAATACAGAGAGACCATCTGCTATTACTAATTATTTGTTCATCGGTGGAGTACTATCTGCAAGATCTATACACACAATGCAACACTTAGGAATCACTCATATTTTGTGTTTGTGTACTAACGAAATTGGACAATCAGATTCTCAATTTGCTGATATATTCACTTACAAAAATTTCTCTGTATGTGACACTGAGAATACTAACATCAGCATCTTATTTGACGAAGCTTGTGATTTTATAGAAAATGTTGAAAGAGCGGGCCAGAGAATTCTAGTTCATTGCTTCGAAGGGAAAAGTAGAAGTGTCACAGTAGTCCTGGCTTACTTGATGCTAAGAAAGAATTTCACATTATTAGAAGCTTGGAATACTATGAAAAAAGTTCACCGTAGAGCACAACCGAATGACGGTTTTGGAAAGATCTTACAGGAACTTGATCAAAAACTGCATGGGAAAGTTTCAATGGAGTGGCGGCAGCGGCGGAGACCAACCATGAAAGTTTGTCCAATATGTGGGAAGAATGCTGGATTGAGTAGTAGTTCACTTAAGCTCCATCTTCAAAAATCACATAAAAGACTATCATCAGGGAGTGTAGATAGTGCCATGACAATGGAAATCCAAAAGACACTAACCTCTTTGAATATCAGCTGTGGTGGGAATATGAGCCCCACACACAGGCAAGCTCGCTCAATGACAGATTAA 2664 0.4092 MSNQQQLRRESSEQQLRREAPEQQHRHREAPSPTTICPHNQDKDQFDSPQTVSQWLRSVRKRTSNSGFPRSSSTIPFSVRDRLGKAEMLDIDSGSFSWDTLSSLHHIEHTSSNQHSEDEVNRSLEITVNSGGVVFFALFNVDGSNDASPKEAAAVIKISSSRMATQSERLGYEFAKWLGVQAPQARVIHNTSLEWLQIKKAAEKARDAASCESNVIGETTCSELLEALELSRCVLFMSYVHGSPLLESSSSFESRDSAERTSAALGRIMMLDLVIRNEDRLPCRQLRWRGNPANLLLTEKAIPSHLDTIGETFDLAMNRYEPGVVSRLEKKKRSTSRSCSHDNRIRTQSSHLLHIRESSNYTCLKSQMSRESIFTGFNIVAIDSGVPRRPPAVKRVADQVSYPKLVELVLNSSEFSSRLLHDITGGKLGSPPLEDITLTIDVQGSVVTSIVQEFRSGFRAALRDLQGFHIFLLTLHQKLDNLLRLFNNTMSKVSLGESENGDSPSPTIGKCLSSTSKGRFSNDSHRDFSDSDSQNSAPRALSSSGNRNVCDSVSPMSREGCHGKSSKGGVEPLHDSRFTAKLREFHKFAKVDAESYKELEHWNEMLKNDAIKLCQENNFNSGFFEGSDSNTVVDAYELKIRLEHILERIALISEAANTERPSAITNYLFIGGVLSARSIHTMQHLGITHILCLCTNEIGQSDSQFADIFTYKNFSVCDTENTNISILFDEACDFIENVERAGQRILVHCFEGKSRSVTVVLAYLMLRKNFTLLEAWNTMKKVHRRAQPNDGFGKILQELDQKLHGKVSMEWRQRRRPTMKVCPICGKNAGLSSSSLKLHLQKSHKRLSSGSVDSAMTMEIQKTLTSLNISCGGNMSPTHRQARSMTD 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02239 887 MobiDBLite consensus disorder prediction 494 519 - -
Vivi3g02239 887 FunFam Dual specificity protein phosphatase PHS1 632 806 - -
Vivi3g02239 887 MobiDBLite consensus disorder prediction 34 51 - -
Vivi3g02239 887 CDD DSP 661 798 - -
Vivi3g02239 887 Pfam Dual specificity phosphatase, catalytic domain 675 800 IPR000340 GO:0008138|GO:0016311
Vivi3g02239 887 Pfam Actin-fragmin kinase, catalytic 81 315 IPR015275 -
Vivi3g02239 887 MobiDBLite consensus disorder prediction 533 553 - -
Vivi3g02239 887 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 35 886 IPR035010 GO:0004721|GO:0009737|GO:0043622
Vivi3g02239 887 SMART dsp_5 660 802 IPR020422 GO:0006470|GO:0008138
Vivi3g02239 887 MobiDBLite consensus disorder prediction 1 51 - -
Vivi3g02239 887 ProSiteProfiles Dual specificity protein phosphatase domain profile. 660 805 IPR020422 GO:0006470|GO:0008138
Vivi3g02239 887 MobiDBLite consensus disorder prediction 494 572 - -
Vivi3g02239 887 Gene3D Protein tyrosine phosphatase superfamily 643 815 IPR029021 -
Vivi3g02239 887 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 729 781 IPR000387 GO:0016311|GO:0016791
Vivi3g02239 887 Gene3D - 245 496 IPR036940 -
Vivi3g02239 887 SUPERFAMILY Protein kinase-like (PK-like) 54 400 IPR011009 -
Vivi3g02239 887 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 660 805 IPR029021 -
Vivi3g02239 887 MobiDBLite consensus disorder prediction 11 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02239 Vivi-Chr3 36872913 36878197 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02239 53 872 Protein tyrosine phosphatase (PTP) family AT5G23720 60.855 0.0 969
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02239 K14165 - gmx:102661225 1143.26