Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02238 ATGTCAAATCAGCAACAACTCCGCCGTGAATCATCCGAGCAACAACTCCGCCGTGAAGCACCTGAGCAACAACACCGCCACCGTGAAGCACCATCCCCAACCACTATCTGTCCGCATAACCAGGATAAAGACCAATTCGACTCGCCCCAAACCGTTTCTCAATGGCTTCGATCAGTTCGCAAACGCACTTCCAATTCCGGTTTCCCTCGCTCTTCTTCCACCATACCTTTTAGTTTTGGAGAGGATGCAGAAATTGACATGGTTCATGATATTAGTGTGAGGGATAGGCTTGGTAAAGCTGAAATGTTGGACATTGACTCCGGCTCCTTTTCTTGGGACACGCTCTCTTCACTTCACCACATTGAGCACACCAGTAGCAATCAACATTCGGAGGATGAAGTCAATAGATCTCTTGAGATCACAGTAAATTCTGGAGGGGTTGTCTTCTTTGCCCTTTTCAATGTAGATGGGAGCAATGATGCTTCTCCAAAAGAAGCAGCAGCGGTCATAAAGATATCTTCGTCAAGAATGGCAACACAGTCTGAACGACTTGGATATGAATTCGCCAAATGGTTGGGAGTCCAAGCTCCACAGGCTAGAGTCATTCACAATACAAGTTTAGAATGGCTCCAAATTAAGAAAGCTGCCGAAAAGGCAAGGGATGCAGCAAGTTGTGAGAGTAATGTAATTGGTGAAACAACATGTTCTGAACTCTTGGAAGCACTCGAGCTTAGCCGGTGTGTCTTGTTTATGAGTTATGTACATGGCTCACCTTTACTTGAAAGCTCTAGTTCATTTGAATCAAGGGATTCTGCAGAAAGAACGTCTGCAGCGCTTGGTAGGATAATGATGTTAGATCTTGTTATCAGAAATGAAGATAGGCTTCCATGCCGTCAACTTAGATGGCGTGGGAACCCTGCAAATTTGTTATTAACTGAAAAAGCAATCCCTTCACATTTAGATACAATAGGAGAAACCTTTGATTTGGCAATGAACCGATATGAGCCCGGGGTGGTTAGTAGGCTTGAGAAAAAAAAAAGATCTACTTCAAGATCGTGTTCTCATGATAATAGAATAAGAACACAAAGCTCTCACCTTTTACATATAAGAGAATCATCCAATTATACATGCCTTAAAAGTCAAATGTCAAGAGAATCAATATTTACAGGCTTCAACATTGTGGCTATTGACTCTGGTGTTCCACGCCGTCCTCCTGCTGTAAAACGTGTCGCTGATCAAGTCAGCTATCCTAAGTTGGTTGAGTTGGTACTAAATAGTTCTGAGTTTTCTTCTCGCCTGTTACATGATATAACCGGAGGGAAATTAGGAAGTCCTCCCTTAGAAGATATAACTTTAACAATTGATGTACAAGGAAGTGTTGTAACATCAATAGTACAGGAGTTCCGCAGTGGTTTTCGTGCTGCTCTTAGGGATCTGCAAGGATTTCATATATTCTTACTTACACTTCACCAGAAACTTGATAACTTGTTAAGATTGTTTAATAATACTATGAGCAAAGTATCATTGGGGGAGTCTGAAAATGGAGATTCACCTTCACCAACTATTGGTAAGTGCCTCTCTTCAACAAGTAAGGGGAGATTTTCTAATGATAGCCATCGAGATTTTAGTGATTCAGATTCACAAAACTCTGCTCCAAGGGCATTGTCATCCTCAGGCAATAGAAATGTTTGTGACTCTGTTTCTCCTATGTCAAGAGAAGGTTGCCATGGAAAATCCTCCAAAGGGGGTGTGGAGCCATTGCATGATTCCCGTTTTACAGCTAAGCTCCGTGAGTTCCATAAATTTGCCAAGGTTGATGCAGAATCTTATAAAGAATTAGAACATTGGAATGAAATGCTCAAAAATGATGCTATCAAGTTGTGCCAGGAGAACAATTTTAATTCAGGATTTTTTGAAGGGAGTGATAGCAACACTGTCGTTGATGCATATGAATTGAAGATTAGACTTGAGCATATCCTTGAAAGGATTGCATTGATATCTGAGGCTGCAAATACAGAGAGACCATCTGCTATTACTAATTATTTGTTCATCGGTGGAGTACTATCTGCAAGATCTATACACACAATGCAACACTTAGGAATCACTCATATTTTGTGTTTGTGTACTAACGAAATTGGACAATCAGATTCTCAATTTGCTGATATATTCACTTACAAAAATTTCTCTGTATGTGACACTGAGAATACTAACATCAGCATCTTATTTGACGAAGCTTGTGATTTTATAGAAAATGTTGAAAGAGCGGGCCAGAGAATTCTAGTTCATTGCTTCGAAGGGAAAAGTAGAAGTGTCACAGTAGTCCTGGCTTACTTGATGCTAAGAAAGAATTTCACATTATTAGAAGCTTGGAATACTATGAAAAAAGTTCACCGTAGAGCACAACCGAATGACGGTTTTGGAAAGATCTTACAGGAACTTGATCAAAAACTGCATGGGAAAGTTTCAATGGAGTGGCGGCAGCGGCGGAGACCAACCATGAAAGTTTGTCCAATATGTGGGAAGAATGCTGGATTGAGTAGTAGTTCACTTAAGCTCCATCTTCAAAAATCACATAAAAGACTATCATCAGGGAGTGTAGATAGTGCCATGACAATGGAAATCCAAAAGACACTAACCTCTTTGAATATCAGCTGTGGTGGGAATATGAGCCCCACACACAGGCAAGCTCGCTCAATGACAGATTAA 2706 0.4084 MSNQQQLRRESSEQQLRREAPEQQHRHREAPSPTTICPHNQDKDQFDSPQTVSQWLRSVRKRTSNSGFPRSSSTIPFSFGEDAEIDMVHDISVRDRLGKAEMLDIDSGSFSWDTLSSLHHIEHTSSNQHSEDEVNRSLEITVNSGGVVFFALFNVDGSNDASPKEAAAVIKISSSRMATQSERLGYEFAKWLGVQAPQARVIHNTSLEWLQIKKAAEKARDAASCESNVIGETTCSELLEALELSRCVLFMSYVHGSPLLESSSSFESRDSAERTSAALGRIMMLDLVIRNEDRLPCRQLRWRGNPANLLLTEKAIPSHLDTIGETFDLAMNRYEPGVVSRLEKKKRSTSRSCSHDNRIRTQSSHLLHIRESSNYTCLKSQMSRESIFTGFNIVAIDSGVPRRPPAVKRVADQVSYPKLVELVLNSSEFSSRLLHDITGGKLGSPPLEDITLTIDVQGSVVTSIVQEFRSGFRAALRDLQGFHIFLLTLHQKLDNLLRLFNNTMSKVSLGESENGDSPSPTIGKCLSSTSKGRFSNDSHRDFSDSDSQNSAPRALSSSGNRNVCDSVSPMSREGCHGKSSKGGVEPLHDSRFTAKLREFHKFAKVDAESYKELEHWNEMLKNDAIKLCQENNFNSGFFEGSDSNTVVDAYELKIRLEHILERIALISEAANTERPSAITNYLFIGGVLSARSIHTMQHLGITHILCLCTNEIGQSDSQFADIFTYKNFSVCDTENTNISILFDEACDFIENVERAGQRILVHCFEGKSRSVTVVLAYLMLRKNFTLLEAWNTMKKVHRRAQPNDGFGKILQELDQKLHGKVSMEWRQRRRPTMKVCPICGKNAGLSSSSLKLHLQKSHKRLSSGSVDSAMTMEIQKTLTSLNISCGGNMSPTHRQARSMTD 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02238 901 MobiDBLite consensus disorder prediction 508 586 - -
Vivi3g02238 901 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 743 795 IPR000387 GO:0016311|GO:0016791
Vivi3g02238 901 Gene3D - 259 510 IPR036940 -
Vivi3g02238 901 SUPERFAMILY Protein kinase-like (PK-like) 54 414 IPR011009 -
Vivi3g02238 901 Pfam Actin-fragmin kinase, catalytic 91 329 IPR015275 -
Vivi3g02238 901 MobiDBLite consensus disorder prediction 34 51 - -
Vivi3g02238 901 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 17 900 IPR035010 GO:0004721|GO:0009737|GO:0043622
Vivi3g02238 901 MobiDBLite consensus disorder prediction 1 51 - -
Vivi3g02238 901 SMART dsp_5 674 816 IPR020422 GO:0006470|GO:0008138
Vivi3g02238 901 MobiDBLite consensus disorder prediction 508 533 - -
Vivi3g02238 901 CDD DSP 675 812 - -
Vivi3g02238 901 MobiDBLite consensus disorder prediction 547 567 - -
Vivi3g02238 901 Gene3D Protein tyrosine phosphatase superfamily 657 829 IPR029021 -
Vivi3g02238 901 ProSiteProfiles Dual specificity protein phosphatase domain profile. 674 819 IPR020422 GO:0006470|GO:0008138
Vivi3g02238 901 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 674 819 IPR029021 -
Vivi3g02238 901 MobiDBLite consensus disorder prediction 11 29 - -
Vivi3g02238 901 FunFam Dual specificity protein phosphatase PHS1 646 820 - -
Vivi3g02238 901 Pfam Dual specificity phosphatase, catalytic domain 689 814 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02238 Vivi-Chr3 36872913 36878197 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02238 53 886 Protein tyrosine phosphatase (PTP) family AT5G23720 60.880 0.0 969
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02238 K14165 - gmx:102661225 1156.74