Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02237 ATGTCAAATCAGCAACAACTCCGCCGTGAATCATCCGAGCAACAACTCCGCCGTGAAGCACCTGAGCAACAACACCGCCACCGTGAAGCACCATCCCCAACCACTATCTGTCCGCATAACCAGATGAAATTGCAGGATAAAGACCAATTCGACTCGCCCCAAACCGTTTCTCAATGGCTTCGATCAGTTCGCAAACGCACTTCCAATTCCGGTTTCCCTCGCTCTTCTTCCACCATACCTTTTAGTGTGAGGGATAGGCTTGGTAAAGCTGAAATGTTGGACATTGACTCCGGCTCCTTTTCTTGGGACACGCTCTCTTCACTTCACCACATTGAGCACACCAGTAGCAATCAACATTCGGAGGATGAAGTCAATAGATCTCTTGAGATCACAGTAAATTCTGGAGGGGTTGTCTTCTTTGCCCTTTTCAATGTAGATGGGAGCAATGATGCTTCTCCAAAAGAAGCAGCAGCGGTCATAAAGATATCTTCGTCAAGAATGGCAACACAGTCTGAACGACTTGGATATGAATTCGCCAAATGGTTGGGAGTCCAAGCTCCACAGGCTAGAGTCATTCACAATACAAGTTTAGAATGGCTCCAAATTAAGAAAGCTGCCGAAAAGGCAAGGGATGCAGCAAGTTGTGAGAGTAATGTAATTGGTGAAACAACATGTTCTGAACTCTTGGAAGCACTCGAGCTTAGCCGGTGTGTCTTGTTTATGAGTTATGTACATGGCTCACCTTTACTTGAAAGCTCTAGTTCATTTGAATCAAGGGATTCTGCAGAAAGAACGTCTGCAGCGCTTGGTAGGATAATGATGTTAGATCTTGTTATCAGAAATGAAGATAGGCTTCCATGCCGTCAACTTAGATGGCGTGGGAACCCTGCAAATTTGTTATTAACTGAAAAAGCAATCCCTTCACATTTAGATACAATAGGAGAAACCTTTGATTTGGCAATGAACCGATATGAGCCCGGGGTGGTTAGTAGGCTTGAGAAAAAAAAAAGATCTACTTCAAGATCGTGTTCTCATGATAATAGAATAAGAACACAAAGCTCTCACCTTTTACATATAAGAGAATCATCCAATTATACATGCCTTAAAAGTCAAATGTCAAGAGAATCAATATTTACAGGCTTCAACATTGTGGCTATTGACTCTGGTGTTCCACGCCGTCCTCCTGCTGTAAAACGTGTCGCTGATCAAGTCAGCTATCCTAAGTTGGTTGAGTTGGTACTAAATAGTTCTGAGTTTTCTTCTCGCCTGTTACATGATATAACCGGAGGGAAATTAGGAAGTCCTCCCTTAGAAGATATAACTTTAACAATTGATGTACAAGGAAGTGTTGTAACATCAATAGTACAGGAGTTCCGCAGTGGTTTTCGTGCTGCTCTTAGGGATCTGCAAGGATTTCATATATTCTTACTTACACTTCACCAGAAACTTGATAACTTGTTAAGATTGTTTAATAATACTATGAGCAAAGTATCATTGGGGGAGTCTGAAAATGGAGATTCACCTTCACCAACTATTGGTAAGTGCCTCTCTTCAACAAGTAAGGGGAGATTTTCTAATGATAGCCATCGAGATTTTAGTGATTCAGATTCACAAAACTCTGCTCCAAGGGCATTGTCATCCTCAGGCAATAGAAATGTTTGTGACTCTGTTTCTCCTATGTCAAGAGAAGGTTGCCATGGAAAATCCTCCAAAGGGGGTGTGGAGCCATTGCATGATTCCCGTTTTACAGCTAAGCTCCGTGAGTTCCATAAATTTGCCAAGGTTGATGCAGAATCTTATAAAGAATTAGAACATTGGAATGAAATGCTCAAAAATGATGCTATCAAGTTGTGCCAGGAGAACAATTTTAATTCAGGATTTTTTGAAGGGAGTGATAGCAACACTGTCGTTGATGCATATGAATTGAAGATTAGACTTGAGCATATCCTTGAAAGGATTGCATTGATATCTGAGGCTGCAAATACAGAGAGACCATCTGCTATTACTAATTATTTGTTCATCGGTGGAGTACTATCTGCAAGATCTATACACACAATGCAACACTTAGGAATCACTCATATTTTGTGTTTGTGTACTAACGAAATTGGACAATCAGATTCTCAATTTGCTGATATATTCACTTACAAAAATTTCTCTGTATGTGACACTGAGAATACTAACATCAGCATCTTATTTGACGAAGCTTGTGATTTTATAGAAAATGTTGAAAGAGCGGGCCAGAGAATTCTAGTTCATTGCTTCGAAGGGAAAAGTAGAAGTGTCACAGTAGTCCTGGCTTACTTGATGCTAAGAAAGAATTTCACATTATTAGAAGCTTGGAATACTATGAAAAAAGTTCACCGTAGAGCACAACCGAATGACGGTTTTGGAAAGATCTTACAGGAACTTGATCAAAAACTGCATGGGAAAGTTTCAATGGAGTGGCGGCAGCGGCGGAGACCAACCATGAAAGTTTGTCCAATATGTGGGAAGAATGCTGGATTGAGTAGTAGTTCACTTAAGCTCCATCTTCAAAAATCACATAAAAGACTATCATCAGGGAGTGTAGATAGTGCCATGACAATGGAAATCCAAAAGACACTAACCTCTTTGAATATCAGCTGTGGTGGGAATATGAGCCCCACACACAGGCAAGCTCGCTCAATGACAGATTAA 2676 0.4088 MSNQQQLRRESSEQQLRREAPEQQHRHREAPSPTTICPHNQMKLQDKDQFDSPQTVSQWLRSVRKRTSNSGFPRSSSTIPFSVRDRLGKAEMLDIDSGSFSWDTLSSLHHIEHTSSNQHSEDEVNRSLEITVNSGGVVFFALFNVDGSNDASPKEAAAVIKISSSRMATQSERLGYEFAKWLGVQAPQARVIHNTSLEWLQIKKAAEKARDAASCESNVIGETTCSELLEALELSRCVLFMSYVHGSPLLESSSSFESRDSAERTSAALGRIMMLDLVIRNEDRLPCRQLRWRGNPANLLLTEKAIPSHLDTIGETFDLAMNRYEPGVVSRLEKKKRSTSRSCSHDNRIRTQSSHLLHIRESSNYTCLKSQMSRESIFTGFNIVAIDSGVPRRPPAVKRVADQVSYPKLVELVLNSSEFSSRLLHDITGGKLGSPPLEDITLTIDVQGSVVTSIVQEFRSGFRAALRDLQGFHIFLLTLHQKLDNLLRLFNNTMSKVSLGESENGDSPSPTIGKCLSSTSKGRFSNDSHRDFSDSDSQNSAPRALSSSGNRNVCDSVSPMSREGCHGKSSKGGVEPLHDSRFTAKLREFHKFAKVDAESYKELEHWNEMLKNDAIKLCQENNFNSGFFEGSDSNTVVDAYELKIRLEHILERIALISEAANTERPSAITNYLFIGGVLSARSIHTMQHLGITHILCLCTNEIGQSDSQFADIFTYKNFSVCDTENTNISILFDEACDFIENVERAGQRILVHCFEGKSRSVTVVLAYLMLRKNFTLLEAWNTMKKVHRRAQPNDGFGKILQELDQKLHGKVSMEWRQRRRPTMKVCPICGKNAGLSSSSLKLHLQKSHKRLSSGSVDSAMTMEIQKTLTSLNISCGGNMSPTHRQARSMTD 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02237 891 MobiDBLite consensus disorder prediction 498 523 - -
Vivi3g02237 891 CDD DSP 665 802 - -
Vivi3g02237 891 MobiDBLite consensus disorder prediction 537 557 - -
Vivi3g02237 891 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 664 809 IPR029021 -
Vivi3g02237 891 Gene3D - 249 500 IPR036940 -
Vivi3g02237 891 MobiDBLite consensus disorder prediction 34 55 - -
Vivi3g02237 891 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 41 890 IPR035010 GO:0004721|GO:0009737|GO:0043622
Vivi3g02237 891 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 733 785 IPR000387 GO:0016311|GO:0016791
Vivi3g02237 891 SMART dsp_5 664 806 IPR020422 GO:0006470|GO:0008138
Vivi3g02237 891 MobiDBLite consensus disorder prediction 498 576 - -
Vivi3g02237 891 Gene3D Protein tyrosine phosphatase superfamily 647 819 IPR029021 -
Vivi3g02237 891 SUPERFAMILY Protein kinase-like (PK-like) 58 404 IPR011009 -
Vivi3g02237 891 Pfam Dual specificity phosphatase, catalytic domain 679 804 IPR000340 GO:0008138|GO:0016311
Vivi3g02237 891 Pfam Actin-fragmin kinase, catalytic 85 319 IPR015275 -
Vivi3g02237 891 ProSiteProfiles Dual specificity protein phosphatase domain profile. 664 809 IPR020422 GO:0006470|GO:0008138
Vivi3g02237 891 MobiDBLite consensus disorder prediction 1 55 - -
Vivi3g02237 891 FunFam Dual specificity protein phosphatase PHS1 636 810 - -
Vivi3g02237 891 MobiDBLite consensus disorder prediction 11 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02237 Vivi-Chr3 36872913 36878197 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02237 25 876 Protein tyrosine phosphatase (PTP) family AT5G23720 59.465 0.0 970
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02237 K14165 - gmx:102661225 1143.26