Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02236 ATGTCAAATGAGCCACAAAACCAGGATAAAGAGCAATTCGAGTCTGAAGGACCATCGCCCCTAACCGTTGCTTCCCGGGTTTTTAATTGGCTTCAATCGGTTAGAAAACGTACTTCCAATTACCGCTCCTCCGGTTTCCCTCGCTCTTCTTCCGTACCCTTTTGTTTTGGAGAATCTGCAGAGGATGCAGAAATTGATATGCTTACTGATCAAACTGAAATTAGCGTGTGGGATAGGCTTGGTAAAGCTGAAATGTTGGACATTGAATCGAATTCCTTTTCTTGGGACATGCTCTCTTCACTTCACCATACTGAGCACACCAGTAGCAATGAGCATTCTGAAGATGAAATGAATAGAGCTCTTGAGATGACAGTAAATTCTGGAGGGGTTGTCTTCTTTGCCCTTTTCAATGTCGTGAGCGATGATGCTTCTCCAAAAGAAGCAGCAGCGGTCATAAAGATATCTTCGTCAAGAATGGCAACACAGTCTGAACGACTTGGATATGAATTCGCCAAATGGTTGGGAGTCCAAGCTCCACAGGCTAGAGTCATTCACAATACCAGTACAGAATGGCTCCAAATAAGGGAAGCGGCAGAAAAAGCAAGGGATGCAGCAAGTTGTGAGAGTGATGTTATTGGTGAAACGACCTGTTCGGAACTTTTGGAAGCACTAGAGCTTAGTCGGTGTCTCTTGTTTATGAGTTATGTACATGGCTCACCTTTACTTGAAAGCTCTAGCGCGTTTGAATCAAGGGATTCTGCAGAAAGAACGTCAGCCGCGCTTGGCAGGGTAATGATGCTAGATCTTGTTATTAGAAATGAAGATAGACTCCCATGCCCTCAACTTAGATGGCGTGGGAACCCTGCCAATTTGTTATTGGCTGAAAAAGCAATCCCTTCAAATTTAGATACAAAAGAAGAAAGTGTTGATTTGGTAATGAACCGGTCCAGGGTAGTTGGGACGCTGCAGAAAAAGAAAAGGTCCACTTCAAGATCATGTTCTCATAATAATGAAATAAGATCACAAGGCTCTCCTCTTTCACATATAAGAGAATCATCTGATGACATGTGCCTTAAAAGTCAAACGTCTACTGGCTCCAACATTGTGGCTATTGACTCTGGTGTTCCTCGTCGACCTCCTGCTATAAAACGTGCAGATGATCAGGTAAGTTATCCTAAGTTGGTTGAGTTAGTACTGAATAGCTCTGAGTTTTCCTCTTGCCTCTTACATGATATAACCGGAGGGAAATTAGGAAGTCCTCCCTTAGAAGACATAAATTTAACCCTTGACATACAAGGGACTGATGTAACATCAATAGTTCACGAGTTCCGTTGTGGTTTTCGTGCTGCTCTTAGGGATCTGCAAGGATTTCATATATTCCTACTTACACTCCATCAAAAACTTGATAACTTGTTACGATCATTTAATAATACTATAAGCAAAATATCACTGGGGGAGTCTGAAAAGGAAGATTCTCCTTCACCTGCTACTGGTTGTTGTCTCTCTCCAACAAGAAAAGAGAGATTTTCTAATGATAGCCATCAAGATTTTAGTGATTCAGATTCACAGAGATCTGCTCCAAGGGCATTGTCATCTTCAGGCAATAGGAATTTTTGCGACTCGGCTTCTCCTATGTCAAGAGAAGGTTGCCATGGAAAATCCTCCAAAGGGAGTCTGGAGCCATTGCACGATTCTCATTTTACAGCTAAGCTTCGAGACTTCCATAAATTTGCCAAGGTTGATGCAGAATCTTATAAAGAATTGGAACACTGGAATGAAATGCTTAAAAGTGATGCTATCAAGTTATGCCAGGAGAACAATTTCAATTCAGGATTTTTTGAGGGAAGTGATAGCAACACTGTTGTTGATGCATATGAATTGAAGATCAGACTTGAGCATATCCTTGAAAGGATTGCATTGATATCTGAGGCTGCAAATACAGAGAGACCTTCTGCTATTACAAATTGTTTGTTCATCGGTGGTGCGCTATCTGCAAGATCTATATACACAATGCAACACTTGGGAATCACTCATATCTTGTGTTTGTGTACTAATGAAATTGGACAATCAGATTCTCAATTTCCGGATCTTTTCACCTACAAAAATTTCTTTGTATGTGACACTGAGAATTCTAACATCAGCCTCTTATTTGAAGAAGCTTGTGATTTTATAGAAGATGTCGAGAGAACAGGTCAGGGAATTCTAGTTCATTGTTTCGAAGGAAAAAGCAGAAGTGTCACTGTAGTCCTTGCTTACTTGATGCTAAGAAAGAGTTTCACATTACTAGAAGCATGGAATGCTATGAAAAAAGTTCACCGTCGAGCACAGCCGAACGACGGTTTTGGAAAGATTTTACAGGAACTGGATCAAAAACTCCATGGGAAGGTTTCAATGGAGTGGCGGAGGCGGAGACCAACAATGAAAGTTTGTCCTATATGTGGTAAGAATGCTGGACTTAGTAGCAGCTCACTTAAGCTCCATCTTCAGAAATCACATAAAAGACTATCATCCGGAAGTGTAGATAGTGCCATGACAATGGAAATCCAAAAGGCATTAACCACTTTGAATATTAGCCGTGGCGGGAGTGTGAGCCCAACACACAGGCTATCTCATTCAATGACAGATTAA 2628 0.4129 MSNEPQNQDKEQFESEGPSPLTVASRVFNWLQSVRKRTSNYRSSGFPRSSSVPFCFGESAEDAEIDMLTDQTEISVWDRLGKAEMLDIESNSFSWDMLSSLHHTEHTSSNEHSEDEMNRALEMTVNSGGVVFFALFNVVSDDASPKEAAAVIKISSSRMATQSERLGYEFAKWLGVQAPQARVIHNTSTEWLQIREAAEKARDAASCESDVIGETTCSELLEALELSRCLLFMSYVHGSPLLESSSAFESRDSAERTSAALGRVMMLDLVIRNEDRLPCPQLRWRGNPANLLLAEKAIPSNLDTKEESVDLVMNRSRVVGTLQKKKRSTSRSCSHNNEIRSQGSPLSHIRESSDDMCLKSQTSTGSNIVAIDSGVPRRPPAIKRADDQVSYPKLVELVLNSSEFSSCLLHDITGGKLGSPPLEDINLTLDIQGTDVTSIVHEFRCGFRAALRDLQGFHIFLLTLHQKLDNLLRSFNNTISKISLGESEKEDSPSPATGCCLSPTRKERFSNDSHQDFSDSDSQRSAPRALSSSGNRNFCDSASPMSREGCHGKSSKGSLEPLHDSHFTAKLRDFHKFAKVDAESYKELEHWNEMLKSDAIKLCQENNFNSGFFEGSDSNTVVDAYELKIRLEHILERIALISEAANTERPSAITNCLFIGGALSARSIYTMQHLGITHILCLCTNEIGQSDSQFPDLFTYKNFFVCDTENSNISLLFEEACDFIEDVERTGQGILVHCFEGKSRSVTVVLAYLMLRKSFTLLEAWNAMKKVHRRAQPNDGFGKILQELDQKLHGKVSMEWRRRRPTMKVCPICGKNAGLSSSSLKLHLQKSHKRLSSGSVDSAMTMEIQKALTTLNISRGGSVSPTHRLSHSMTD 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02236 875 MobiDBLite consensus disorder prediction 522 542 - -
Vivi3g02236 875 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 24 874 IPR035010 GO:0004721|GO:0009737|GO:0043622
Vivi3g02236 875 MobiDBLite consensus disorder prediction 326 349 - -
Vivi3g02236 875 SUPERFAMILY Protein kinase-like (PK-like) 30 388 IPR011009 -
Vivi3g02236 875 MobiDBLite consensus disorder prediction 507 521 - -
Vivi3g02236 875 Gene3D Protein tyrosine phosphatase superfamily 632 803 IPR029021 -
Vivi3g02236 875 MobiDBLite consensus disorder prediction 334 349 - -
Vivi3g02236 875 CDD DSP 650 787 - -
Vivi3g02236 875 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 718 770 IPR000387 GO:0016311|GO:0016791
Vivi3g02236 875 Pfam Dual specificity phosphatase, catalytic domain 660 789 IPR000340 GO:0008138|GO:0016311
Vivi3g02236 875 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 649 794 IPR029021 -
Vivi3g02236 875 SMART dsp_5 649 791 IPR020422 GO:0006470|GO:0008138
Vivi3g02236 875 ProSiteProfiles Dual specificity protein phosphatase domain profile. 649 794 IPR020422 GO:0006470|GO:0008138
Vivi3g02236 875 MobiDBLite consensus disorder prediction 485 557 - -
Vivi3g02236 875 Gene3D - 241 485 IPR036940 -
Vivi3g02236 875 Pfam Actin-fragmin kinase, catalytic 73 312 IPR015275 -
Vivi3g02236 875 FunFam Dual specificity protein phosphatase PHS1 621 795 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02236 Vivi-Chr3 36861539 36867324 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02236 14 860 Protein tyrosine phosphatase (PTP) family AT5G23720 59.910 0.0 970
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02236 K14165 - gmx:102661225 1193.33