Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02234 ATGGCATTTCCTATCTTACTTCTTCATCTTACTTTTTTCACCTTGAAGGTTTTCTCTTCTCATTCTCATCCTCATTCTCATGCAGACAGAATCATTTCCCTCCCTGGACAATACCAAAACATAGCCTTTCAACAATTCTCAGGCTATATCACAGTTGATGACAAAGAACACAAGTCACTTTTTTACTATTTTGCTGAATCAGAAACCAACCCTTCTTCTAAGCCTCTTGTTCTTTGGCTCAATGGTGGACCTGGCTGCTCTTCTCTTGGAGTTGGTGCATTCTCAGAAAATGGACCCTTTAGACCAAATGGTGAATTTCTCATCAAAAATGAACATAGTTGGAACAAAGAGGCCAATATGCTGTATTTGGAGACACCAATTGGAGTTGGATTCTCTTATGCAAAAGGTAGTTCTGCTTATACAACAACAGTGAATGATGAGGAAACAGCTAGGGACAATCTAGTGTTCTTGGAAAGATGGTTTGATAAGTTTCCTCAATATAGAAACAGAGATTTGTTTCTAACTGGTGAAAGCTATGCAGGTCATTATGTTCCTCAACTTGCAAAGCTTATGATTGAAATGAACAAAAGAAACAAGATATTCAATCTCAAAGGCATAGCTTTGGGGAATCCTGTTCTGGAATATGCAACTGATTTCAATTCAAGGGCTGAATTCTTTTGGTCTCATGGACTGATATCTGATTCAACTTACAATATGTTCACTAGAGTGTGTAATTACTCTCGCTATGTTCGTGAGTACAATAGAGATTCTGTTTCATCTGTTTGTTCAAATGTTATGGGATTGGTGAGCAAAGAGACTAGTAGATTTGTGGATAAATATGATGTCACTCTTGATGTTTGTATTTCCTCTGTGTTGTCACAATCTAAGGTTATTTCTCCTCAACCTCAACAAGCAAAAGAGATGATAGATGTGTGTGTGGATGACAAGGTTACAAACTACTTAAACAGGAGAGATGTGCAAGAAGCACTTCATGCAAAGCTCGTCGGAGTTCGCAAGTGGGATGTATGCAGCAATGTTTTGGACTATGATTTGCTTAACTTGGAAGTGCCAACACTTCCTATTGTTGGATCACTAATAAGAGCTGGAATTAAGGTCCTAATTTACAGTGGTGATCAAGACTCAGTGATTCCACTGACTGGAAGCAGAACCTTAGTTCAAAAATTGGCCAGACAAATAGGACTGAATACAACAGTCCCTTACAGGGTCTGGTTTGAAAGACAACAGGTTGGTGGATGGACTCAAGTGTATGGAAATATTCTGTCATTTGCCACAGTGAGAGGTGCTGCACATGAAGCTCCTTTCTCACAGCCAGAAAGATCACTCGTGCTATTCAAATCATTCTTGGAAGGAACCCCTTTGCCTGAAGTTTTCTGA 1395 0.3921 MAFPILLLHLTFFTLKVFSSHSHPHSHADRIISLPGQYQNIAFQQFSGYITVDDKEHKSLFYYFAESETNPSSKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEFLIKNEHSWNKEANMLYLETPIGVGFSYAKGSSAYTTTVNDEETARDNLVFLERWFDKFPQYRNRDLFLTGESYAGHYVPQLAKLMIEMNKRNKIFNLKGIALGNPVLEYATDFNSRAEFFWSHGLISDSTYNMFTRVCNYSRYVREYNRDSVSSVCSNVMGLVSKETSRFVDKYDVTLDVCISSVLSQSKVISPQPQQAKEMIDVCVDDKVTNYLNRRDVQEALHAKLVGVRKWDVCSNVLDYDLLNLEVPTLPIVGSLIRAGIKVLIYSGDQDSVIPLTGSRTLVQKLARQIGLNTTVPYRVWFERQQVGGWTQVYGNILSFATVRGAAHEAPFSQPERSLVLFKSFLEGTPLPEVF 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02234 464 Pfam Serine carboxypeptidase 35 457 IPR001563 GO:0004185|GO:0006508
Vivi3g02234 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 133 IPR001563 GO:0004185|GO:0006508
Vivi3g02234 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Vivi3g02234 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 427 440 IPR001563 GO:0004185|GO:0006508
Vivi3g02234 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 110 122 IPR001563 GO:0004185|GO:0006508
Vivi3g02234 464 FunFam Carboxypeptidase 24 461 - -
Vivi3g02234 464 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 444 IPR001563 GO:0004185|GO:0006508
Vivi3g02234 464 FunFam Carboxypeptidase 358 457 - -
Vivi3g02234 464 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
Vivi3g02234 464 Gene3D - 358 457 - -
Vivi3g02234 464 Gene3D alpha/beta hydrolase 24 298 IPR029058 -
Vivi3g02234 464 Gene3D - 312 348 - -
Vivi3g02234 464 SUPERFAMILY alpha/beta-Hydrolases 31 461 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02234 Vivi-Chr3 36842371 36845394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02234 320 460 Calmodulin-binding Proteins AT2G22960 28.369 4.84e-16 74.3