Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02226 ATGGCAGCTTTTTCATATCAATACAATCCTTTCCTCGTTGATCACTCACACTCACCATTCATGTTCAACATAAACACTACCTCTCCTCTTCCTCATCCTCAGTTTCATCCTCTTCATCAAGATATTATTAACTGTGTTGATCATCAAAGCTCCAAAGTTACTACCATCACTGACAATGAACCTTCTTCTCTCACCAAAAACCTTAGTCCTCAGTCCTCCATGGTATTGGACAAGCTCGAAACCGGCGACGAGCAGGTTACTCAGAAAATTAATCCTATGGAGAAGAAAAGAAGAACCAGAAACAATGGACCTTCCTCAAATAACCCTAAATCTCATGAAATTGCAGCAGAAGGGAGAAACAAAAAACAGAAGAAAAACAAAGAAGAGAAAAAAGATGAGAGAAAATGTTTGGATGAGCCTCCAACTGGTTACATCCACGTCAGAGCAAGAAGAGGTCAGGCCACTGATAGCCACAGCCTTGCTGAAAGGGTAAGAAGAGAGAAAATAAGTGAAAGGATGAAGAAGTTGCAACAACTTGTGCCAGGCTGTGATAAGGTCACTGGAAAAGCCCTTATGTTAGATGAAATAATCAATTATGTTCAGTCTTTACAAAATCAAGTAGAGTTTTTATCAATGAAACTTACTTCTGTGAATCCAATGTTCTATGAGATGGCAACAGACCTAGAGACTTTCATGGTTAGACCAGATAAACTAAATAACTTAGCATCACCATCACCACTATCATCATCAGTGTCACATTGCAACAGTCCCAAACAAGGCACAGCTTATGCTGATACAACCACCATGAATACTCCAACCAACATTTTCCAAACTACTACTGATTACAACCACCTTTTGGATACTTCAGCTTCAGTTTTTCTTCAAGGACAGAGATCAAATGTTGTTTCTGAGGATGGTAGCCATTTTTGGGAGGTAGAAGATCAACGACAAAAGTTTCTTAATTCACATGGATTCAACAACAACTTATGTTCATTTTCATTAATTTAA 1008 0.3849 MAAFSYQYNPFLVDHSHSPFMFNINTTSPLPHPQFHPLHQDIINCVDHQSSKVTTITDNEPSSLTKNLSPQSSMVLDKLETGDEQVTQKINPMEKKRRTRNNGPSSNNPKSHEIAAEGRNKKQKKNKEEKKDERKCLDEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKKLQQLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLTSVNPMFYEMATDLETFMVRPDKLNNLASPSPLSSSVSHCNSPKQGTAYADTTTMNTPTNIFQTTTDYNHLLDTSASVFLQGQRSNVVSEDGSHFWEVEDQRQKFLNSHGFNNNLCSFSLI 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02226 335 SMART finulus 159 209 IPR011598 GO:0046983
Vivi3g02226 335 FunFam Basic helix-loop-helix transcription factor 150 223 - -
Vivi3g02226 335 Pfam Helix-loop-helix DNA-binding domain 157 204 IPR011598 GO:0046983
Vivi3g02226 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 203 IPR011598 GO:0046983
Vivi3g02226 335 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 65 267 IPR024097 GO:0006355
Vivi3g02226 335 MobiDBLite consensus disorder prediction 114 162 - -
Vivi3g02226 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 221 IPR036638 GO:0046983
Vivi3g02226 335 Gene3D - 150 224 IPR036638 GO:0046983
Vivi3g02226 335 MobiDBLite consensus disorder prediction 244 266 - -
Vivi3g02226 335 MobiDBLite consensus disorder prediction 78 162 - -
Vivi3g02226 335 CDD bHLH_AtBPE_like 143 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02226 Vivi-Chr3 36755103 36757591 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02226 1 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 43.750 2.50e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi3g02226 HLH 2.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02226 - - gmx:100806696 415.231