Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02225 ATGGCAGCTTTTTCATATCAATACAATCCTTTCCTCGTTGATCACTCACACTCACCATTCATGTTCAACATAAACACTACCTCTCCTCTTCCTCATCCTCAGTTTCATCCTCTTCATCAAGATATTATTAACTGTGTTGATCATCAAAGCTCCAAAGTTACTACCATCACTGACAATGAACCTTCTTCTCTCACCAAAAACCTTAGTCCTCAGTCCTCCATGGTATTGGACAAGCTCGAAACCGGCGACGAGCAGGTTACTCAGAAAATTAATCCTATGGAGAAGAAAAGAAGAACCAGAAACAATGGACCTTCCTCAAATAACCCTAAATCTCATGAAATTGCAGCAGAAGGGAGAAACAAAAAACAGAAGAAAAACAAAGAAGAGAAAAAAGATGAGAGAAAATGTTTGGATGAGCCTCCAACTGGTTACATCCACGTCAGAGCAAGAAGAGGTCAGGCCACTGATAGCCACAGCCTTGCTGAAAGGGTAAGAAGAGAGAAAATAAGTGAAAGGATGAAGAAGTTGCAACAACTTGTGCCAGGCTGTGATAAGGTCACTGGAAAAGCCCTTATGTTAGATGAAATAATCAATTATGTTCAGTCTTTACAAAATCAAGTAGAGTTTTTATCAATGAAACTTACTTCTGTGAATCCAATGTTCTATGAGATGGCAACAGACCTAGAGACTTTCATGAAACTAAATAACTTAGCATCACCATCACCACTATCATCATCAGTGTCACATTGCAACAGTCCCAAACAAGGCACAGCTTATGCTGATACAACCACCATGAATACTCCAACCAACATTTTCCAAACTACTACTGATTACAACCACCTTTTGGATACTTCAGCTTCAGTTTTTCTTCAAGGACAGAGATCAAATGTTGTTTCTGAGGATGGTAGCCATTTTTGGGAGGTAGAAGATCAACGACAAAAGTTTCTTAATTCACATGGATTCAACAACAACTTATGTTCATTTTCATTAATTTAA 996 0.3845 MAAFSYQYNPFLVDHSHSPFMFNINTTSPLPHPQFHPLHQDIINCVDHQSSKVTTITDNEPSSLTKNLSPQSSMVLDKLETGDEQVTQKINPMEKKRRTRNNGPSSNNPKSHEIAAEGRNKKQKKNKEEKKDERKCLDEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKKLQQLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLTSVNPMFYEMATDLETFMKLNNLASPSPLSSSVSHCNSPKQGTAYADTTTMNTPTNIFQTTTDYNHLLDTSASVFLQGQRSNVVSEDGSHFWEVEDQRQKFLNSHGFNNNLCSFSLI 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02225 331 MobiDBLite consensus disorder prediction 114 165 - -
Vivi3g02225 331 SMART finulus 159 209 IPR011598 GO:0046983
Vivi3g02225 331 MobiDBLite consensus disorder prediction 78 165 - -
Vivi3g02225 331 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 65 266 IPR024097 GO:0006355
Vivi3g02225 331 FunFam Basic helix-loop-helix transcription factor 150 223 - -
Vivi3g02225 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 203 IPR011598 GO:0046983
Vivi3g02225 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 221 IPR036638 GO:0046983
Vivi3g02225 331 Gene3D - 150 224 IPR036638 GO:0046983
Vivi3g02225 331 CDD bHLH_AtBPE_like 143 228 - -
Vivi3g02225 331 Pfam Helix-loop-helix DNA-binding domain 157 204 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02225 Vivi-Chr3 36755098 36757592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02225 1 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 44.333 5.72e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi3g02225 HLH 2.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02225 - - gmx:100806696 403.675