Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02220 ATGAAGGAATCAACAGACTCAGACCCAATAACAATTTGCCTCACCCTAACCAACTCCCTTCTCCACCAAGAAATCCCTACCGTCCATCACTTAAAATCCAAGTGGTCAATCGCCCGACTCAAACTCACCTCCCTCCAAACCCACCTCACCGATTTCTCCACCGAATATTCCACTTCCTCCACCACCAACCCCCTCTCCCTCCACCTCCTCCACTCCATCACCCAAACCCTCCACGACGCCGTTTCACTCTCCCACCACTGCCAGTCCCCCTCCGATTTACCTCTCGGAAAACTCCAAACCCAAAGCCACCTCGACTCACTCATCGCCACCCTCCACCGCCACCTCAACGACTGCGACGTCCTCTTCCGTAGCGGCCTCCTCCTCGAAACCCCCGCTTTCTCCAAACGAGAAGCCGTTCGATCTCTTTCCAGAAACCTCATCGCACGGTTGCAAATCGGGTCGACTGACTCAAGAGCCGCCGCGATTGATTCACTTCTCTCCTTACTCCACGAAGATGATAAAAACGTCACTATAGCCGTCGCGCAGGGTGTAGTTCCGGTGCTCGTTCGTTTACTGGACTCCTCCTCTGATATGAAGGAGAAAACCGTTGCTGCTATTTCTAGAGTCTCGACAGTGGATAGTGGGAAGAATAATCTACTTGCGGAGGGGTTGTTGCTGTTGAATCACTTGCTTAGGGTTTTGGATTCTGGAAGTGGTTTAGCTATAGAGAAAGCTTGTATTGCGCTTCAGGCGTTGAGTCTTACTAGAGATAATGCGAGAGCGATTGGATCTAGAGGTGGGATTTCGTCTCTGTTAGGGATTTGTCAGGGTGGGACGCCTGGTTCGCAAGCTTCGGCGGCGGCGGTTTTGAGGAATTTGGCGAAATTTAATGAGATTAGAGAGAATTTTGCGGAGGAGAATGCGGTTGGTGTTTTGTTAGGGTTGGCTTCTTCTGGGACGATATTGGCGCAAGAGAATGTGATTGGTTGTGTGGCGAATTTGATTTCGGAGGATGAGGGGATGAGGGTTTTGGCTTATAAGGAAGGTGGAATTGAGTGTTTGAAGAATTTCTGGGATTCGGCTCCAATGATTCAGAATCTTGAAGTTGGTGTTGAAATGTTGAGGTATTTGGCGTTGACGGGTCCGATTGGGGAGGTTCTTGTTGCAGAAGGGTTTATTGGGAGGGTGATGGGAGTGTTGAATTGTGAAGTTTTGACGGTGAGGATAGCGGCTGCGAAAGCGGTTTATGCAATGGGTTTGAATGGTGGAAACAAAACCAGAAAAGAAATGGGGGAATGTGGGTGTGTTCCTTTTTTGATTAAGATGTTAGATGGGAAAGGCGCGGAGGAGAAAGAATCCGCTGCAATGGCGTTGTCCGTGTTACTGCAACACCCTTTCAATAGAAGGGTTTTTCGGAAGGATGAAAGGGGAATAGTTAGTACAGTTCAGCTATTGAACCCTTCTTTGGTTAATTTAGATAAGCAATACCCAGTTTCTGTTCTGGTTTCGCTCTTGCATTCTAAGACTTGTAGGAAACAAATGGTGGCTGCTGGTGCTGGTGTATATACGCAGAAGCTTGTTGAATTGGATGTTCCGGGTTCGAAGAAATTGTCGGATGGACTTGGTCGTGGTAAGATCTGGGGAGTTTTTGCAAGACCCTAA 1662 0.485 MKESTDSDPITICLTLTNSLLHQEIPTVHHLKSKWSIARLKLTSLQTHLTDFSTEYSTSSTTNPLSLHLLHSITQTLHDAVSLSHHCQSPSDLPLGKLQTQSHLDSLIATLHRHLNDCDVLFRSGLLLETPAFSKREAVRSLSRNLIARLQIGSTDSRAAAIDSLLSLLHEDDKNVTIAVAQGVVPVLVRLLDSSSDMKEKTVAAISRVSTVDSGKNNLLAEGLLLLNHLLRVLDSGSGLAIEKACIALQALSLTRDNARAIGSRGGISSLLGICQGGTPGSQASAAAVLRNLAKFNEIRENFAEENAVGVLLGLASSGTILAQENVIGCVANLISEDEGMRVLAYKEGGIECLKNFWDSAPMIQNLEVGVEMLRYLALTGPIGEVLVAEGFIGRVMGVLNCEVLTVRIAAAKAVYAMGLNGGNKTRKEMGECGCVPFLIKMLDGKGAEEKESAAMALSVLLQHPFNRRVFRKDERGIVSTVQLLNPSLVNLDKQYPVSVLVSLLHSKTCRKQMVAAGAGVYTQKLVELDVPGSKKLSDGLGRGKIWGVFARP 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02220 553 Gene3D - 136 229 IPR011989 -
Vivi3g02220 553 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 14 551 - -
Vivi3g02220 553 SUPERFAMILY ARM repeat 145 491 IPR016024 -
Vivi3g02220 553 Gene3D - 230 529 IPR011989 -
Vivi3g02220 553 SMART arm_5 255 295 IPR000225 GO:0005515
Vivi3g02220 553 SMART arm_5 423 463 IPR000225 GO:0005515
Vivi3g02220 553 SMART arm_5 172 211 IPR000225 GO:0005515
Vivi3g02220 553 SMART arm_5 296 336 IPR000225 GO:0005515
Vivi3g02220 553 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 183 224 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02220 Vivi-Chr3 36564229 36566470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02220 141 296 U-box Gene Family AT1G23030 31.013 5.02e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02220 - - gmx:100794077 743.036