LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g02217	ATGGGTTGCGTGCTTGGGACGGCGGCCGGTGACGGAGATCAACGTCGTCGACGGAGAGAGCAGCGTAAGGATTCTTCTGAAGGGAGAAATAATGTCGTTAGGGTTCGAGAGAAGCAAACGAGTCGTCATACTGGAGATTTTCCGGGGAATCTTCCGGCGTTGGAGCACCGGAAACCTATGCTTGATCCGTGCGCGGTGAATCAGCAGGGTTGGCCGTCGTGGTTGATGGCTGTTGCCGGTGAAGCAATCGGCGATTGGACTCCTCGTCGTGCAAACACGTTTGAGAAGCTTGCTAAGATTGGGCAAGGGACGTATAGTAATGTGTATAAAGCTAGAGACCTTATTACAGGGAAGATTGTGGCTTTGAAGAAAGTGAGATTTGATAATCTAGAACCAGAGAGTGTCAAGTTTATGGCAAGAGAGATACTTGTTTTGAGGAAACTCGATCACCCGAATGTCGTAAAGCTTGAAGGATTGGTTACTTCTAGAATGTCATGTAGTCTTTATTTGGTGTTTGAGTATATGGAACATGATCTTGCAGGTCTTTCAGCTGGTCAAGGTGTTAAGTTCACTGAATCTCAGGTCAAATGCTTTATGAAGCAATTACTTTCTGGTCTTGAGCATTGCCACAGTCGAGGCGTATTGCACCGTGATATCAAGGGTTCCAATCTGCTTATTGACAACGAAGGAATCCTTAAAATTGCAGATTTTGGATTGGCAACTTTCTATAATCCTAAGCAAAAGCAGTGCATGACAAGCAGAGTTGTGACACTTTGGTATCGACCCCCTGAGCTTCTTCTTGGAGCTACCTTTTATGGTGTGGGTATTGACCTTTGGAGTGCTGGTTGCATTTTGGCAGAGCTGCTTGCTGGGAAGCCAATCATGCCTGGCCGAACAGAGGTTGAACAACTACACAAAATCTTTAAGTTGTGTGGCTCTCCAGCTGAGGAATATTGGAGGAAGCATAAATTGCCAAATGCTACTATCTTTAAGCCACAGCAGCCATATAAACGTTGTATCTCAGAAACATTCAAGGATTTTCCTCAATCTTCACTACCTCTAATTGAAACTCTTCTTGCAATCGATCCTGATGGCCGTAAGACTGCCTCAGATGCTCTAAATCATGACTTTTTTACCACTGAGCCCTATGCTTGTGAACCGTCAAGTTTACCAAAGTATCCTCCTAGCAAAGAATTGGATGTAAAAATGAGAGATGAAGAAGCTAGAAGGCAAAAAGCACTAAATGGAAAAGCTAATGCAGATGGTGGCAAAAGAGTCAGAGCACGGGAGCGTGGTCGTGCCATGCCGGCCCCAGAAGCCAATGCAGAGATCCAAACAAACTTAGATAGGTGGAGAGTTGTGACCCACGCAAATGGAAAAAGCAAGAGTGAGAAGTTTCCACCTCCTCATCAAGATGGAGCTGTTGGATATCCACAAGATTCATCAAGTAAAGGACCTGTTTCATTTGGTGCCCCAGACACATCCTTTAGTTCAGGGATATTCAATATGAAACCATCCGGTTCTTCTAGAAATCATGAAGGTACAGGACTTCACAAAGGAACAAAAACTAAAAAAGAAGAGTCTCAGATGGGTTCATCATGGAAATTTATGCGGCCGTTCAAACCATCAACAATTGGACTTTCAATGGATTTATTATTTAGGAGCAAATGA	1671	0.4417	MGCVLGTAAGDGDQRRRRREQRKDSSEGRNNVVRVREKQTSRHTGDFPGNLPALEHRKPMLDPCAVNQQGWPSWLMAVAGEAIGDWTPRRANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVKFMAREILVLRKLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLSAGQGVKFTESQVKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLATFYNPKQKQCMTSRVVTLWYRPPELLLGATFYGVGIDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPAEEYWRKHKLPNATIFKPQQPYKRCISETFKDFPQSSLPLIETLLAIDPDGRKTASDALNHDFFTTEPYACEPSSLPKYPPSKELDVKMRDEEARRQKALNGKANADGGKRVRARERGRAMPAPEANAEIQTNLDRWRVVTHANGKSKSEKFPPPHQDGAVGYPQDSSSKGPVSFGAPDTSFSSGIFNMKPSGSSRNHEGTGLHKGTKTKKEESQMGSSWKFMRPFKPSTIGLSMDLLFRSK	556

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g02217	556	PANTHER	CELL DIVISION PROTEIN KINASE	92	382	-	-
	Vivi3g02217	556	Gene3D	Transferase(Phosphotransferase) domain 1	177	418	-	-
	Vivi3g02217	556	SUPERFAMILY	Protein kinase-like (PK-like)	88	383	IPR011009	-
	Vivi3g02217	556	MobiDBLite	consensus disorder prediction	476	514	-	-
	Vivi3g02217	556	MobiDBLite	consensus disorder prediction	11	43	-	-
	Vivi3g02217	556	MobiDBLite	consensus disorder prediction	515	531	-	-
	Vivi3g02217	556	FunFam	probable serine/threonine-protein kinase At1g54610	177	418	-	-
	Vivi3g02217	556	ProSiteProfiles	Protein kinase domain profile.	94	378	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi3g02217	556	CDD	STKc_CDK9_like	94	378	-	-
	Vivi3g02217	556	FunFam	probable serine/threonine-protein kinase At1g54610	81	176	-	-
	Vivi3g02217	556	SMART	serkin_6	94	378	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi3g02217	556	MobiDBLite	consensus disorder prediction	422	436	-	-
	Vivi3g02217	556	MobiDBLite	consensus disorder prediction	1	52	-	-
	Vivi3g02217	556	ProSitePatterns	Protein kinases ATP-binding region signature.	100	123	IPR017441	GO:0005524
	Vivi3g02217	556	Gene3D	Phosphorylase Kinase; domain 1	81	176	-	-
	Vivi3g02217	556	MobiDBLite	consensus disorder prediction	411	537	-	-
	Vivi3g02217	556	Pfam	Protein kinase domain	94	378	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi3g02217	556	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	214	226	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g02217	Vivi-Chr3	36530642	36535073	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g02217	86	412	Core Cell Cycle Gene Families	AT5G10270	51.714	6.52e-116	351

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Vivi3g02217		Pkinase	4.4e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g02217	K08819		-	gmx:100807756	997.653