Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02200 ATGGGAAGTACAACTACAAACGTCTCTAACAATGAACAACCTAATGTAAAGAGAGGAGAACCGATTCGAGTTCAACCGGCAGAAGAAACAGAAAAAGGACTATATTTTCTTTCGAATCTCGACCAGAATATCGCGGTTCCAATGCGAACGATTTATTGCTTTAAATCAGAAACTAGAGGGAATGAAGAAGCTGGACAAGTTATTAAGGATGCTTTGTCGAAGATTCTTGTTCCTTATTATCCTATGGCGGGGAAATTGGTTATAAGCTCAGAAGGGAAGTTGATAGTTGATAATACAGGAGAAGGTGCAGTTTTTGTTGAGGCTGAAGCTGATTGTGGTGTAGATGAGATTGGTGATTTGAGAAAACCAGATCCTGATAAGCTTGGGAAATTGGTTTATGATGTTCCAGATGCTAAGAGTATATTGGAGATGCCTCCTATGACTGTTCAGGTGACAAAGTTCAAATGTGGAGGATTCACATTAGGACTCAACATGATCCATTGCATGAAAGATGGACTATCTGCCATGGAGTTTGTCAATGCATGGGCTCAAACAGCAAGAGGTTTAGAATTAAAACTCCCCCCATTTCTCGATCGAACCATTCTCAAATCACGCAACCCTCCAAAAATCGAGTTCCACCACCACGAATTCGACGAAATTGAAGACCTCTCAAACACCAAAAAAACCTACCAAGACGAAAAAATCATCCACAAATCCTTCCTTTTCGACCCCGAGAAACTCGACTCACTCAAGAAAAAGGCCACGGAAGACGGAGTTTTGAAAAAATGTTCAACTTTCGAAGCACTCTCGGCTTTCGTATGGCGATCAAGAACTTCGGCCTTAAAAATGCATCCTAATCAACAAACTAAACTTCTCTTCGCGGTCGACGGACGGTCGAGATTCGTCCCGCCGATACCAAAGGGATACTTTGGTAATTCCATTGTGCTAACAAACTCTATGTGCAAAGCAGATGAGTTACTGAATAACCCTTTTTCATTTTCAGTTGGATTGGTTCACAATGCAATTGATATGATCAATGATAATTACATGAGATCTGCTATTGATTATTTCGAAGTTACAAGAGCTAGACCTTCTTTAACAGCAACACTTTTGATCACAACTTGGACTAAATTGTCTTTTGACACAACTGATTTTGGTTGGGGTGAACCACTTTGTTCTGGTCCTGTTACATTGCCAGATAAAGAAGTTGTTTTGTTCTTGTCACATGGTCAAGAAAAGAAAAGTATAAGTGTTCTTCTTGGTTTGCCTGCTTCTGCTATGGAACGTTTTGAAGAATTGGTGATTAATATGGTATGA 1317 0.3994 MGSTTTNVSNNEQPNVKRGEPIRVQPAEETEKGLYFLSNLDQNIAVPMRTIYCFKSETRGNEEAGQVIKDALSKILVPYYPMAGKLVISSEGKLIVDNTGEGAVFVEAEADCGVDEIGDLRKPDPDKLGKLVYDVPDAKSILEMPPMTVQVTKFKCGGFTLGLNMIHCMKDGLSAMEFVNAWAQTARGLELKLPPFLDRTILKSRNPPKIEFHHHEFDEIEDLSNTKKTYQDEKIIHKSFLFDPEKLDSLKKKATEDGVLKKCSTFEALSAFVWRSRTSALKMHPNQQTKLLFAVDGRSRFVPPIPKGYFGNSIVLTNSMCKADELLNNPFSFSVGLVHNAIDMINDNYMRSAIDYFEVTRARPSLTATLLITTWTKLSFDTTDFGWGEPLCSGPVTLPDKEVVLFLSHGQEKKSISVLLGLPASAMERFEELVINMV 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02200 438 Gene3D - 15 217 IPR023213 -
Vivi3g02200 438 FunFam Spermidine hydroxycinnamoyl transferase 14 217 - -
Vivi3g02200 438 Pfam Transferase family 23 432 - -
Vivi3g02200 438 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 24 433 - -
Vivi3g02200 438 MobiDBLite consensus disorder prediction 1 16 - -
Vivi3g02200 438 FunFam Tryptamine hydroxycinnamoyl transferase 221 435 - -
Vivi3g02200 438 Gene3D - 218 436 IPR023213 -
Vivi3g02200 438 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02200 Vivi-Chr3 36247057 36250700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02200 24 437 Monolignol Biosynthesis Gene Families AT5G48930 35.731 9.44e-89 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02200 K15400 - gmx:100794490 696.812