Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02188 ATGGAGTGGAATTTGAAAGCATCTTCATGGGATTTGAGTGGTATAGAGGAGGCAACAGCATTACCTAACATAGAAACAATGGAAGAATCAAACAGATTTGGAGTTTATAAGACCAAAGGGGAGTTTTCTGTTGACTTGAAGCTTGGTCAGGTTGGGAATTCAGCTACTGAATCATCATCATCGTTACTTCCATTGTCCAAAGATGTTTCTGCTTCTTCTGTATCCAAAATTGCGTCGCCTTCTTCGTCTTCGGGGTCTTTTAAGAGAGCGCGAGCGGTTAATAACACTACATTGACAGTTTCTTGTCTCGTGGATGGGTGCAATTCTGATCTTAGTAATTGTAGGGATTATCATAGGCGGCATAAGGTTTGTGAACTTCATTCCAAAACTCCGGAGGTTTCGATTGGTGGACTAAAACAAAGATTTTGCCAACAGTGTAGCAGGTTCCATTCGCTCGATCAATTTGATGAAAGAAAAAGAAGTTGCAGGAAACGTTTAGACGGACACAATAAAAGGAGAAGAAAACCTCAGCCTGAACCTATCACGCGACCTGCTGGCAGTTTTTTGTCCAATTACCAAGGCACACAGTTGCTACCCTTTTCGAGTTCTACTGCTATGGTGAATTCACCTTGGAGTAACGGCCTCATTTCTTCCTGCGAAAGTGGTATGCTTCACATCCACAATCAACACCAACAAGTTCCTGTACTTGACAAACAAGATCTTTTCCTCGGTTCTACTGCAACCAGTTACGGAGAAGGGAAGCAACTTCAATTCTTACACACCGACAACAACATTCCCTCGCTTCATAACCCGAACACATCTCTTCTAAGGACAAGCAACAAAATGTTCTGTGATAGCTTAACGAATTCATCAGTAAACGAATCTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACACACACACCCGAGAATGGTTTGAACCAAATGGTGCAGCAGCAGCAGCAGACTCATTCAATGTCCCTTATGCAGCCCTTAGGACTGAGTCTGCATGGTAATAACAACAACAGCTTTGAATCTATGGATAGAGTTTTGGTCCCTAATGGGAGTGAGAGTGATCATTGTTCTTCATTGTATAACTTGGCTTCAGATGGTTCTCAAGGCAATGAAGCACCTCAACTCTTCCCCTATCAATGGGAATAG 1164 0.427 MEWNLKASSWDLSGIEEATALPNIETMEESNRFGVYKTKGEFSVDLKLGQVGNSATESSSSLLPLSKDVSASSVSKIASPSSSSGSFKRARAVNNTTLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVSIGGLKQRFCQQCSRFHSLDQFDERKRSCRKRLDGHNKRRRKPQPEPITRPAGSFLSNYQGTQLLPFSSSTAMVNSPWSNGLISSCESGMLHIHNQHQQVPVLDKQDLFLGSTATSYGEGKQLQFLHTDNNIPSLHNPNTSLLRTSNKMFCDSLTNSSVNESPCALSLLSSSQTHTPENGLNQMVQQQQQTHSMSLMQPLGLSLHGNNNNSFESMDRVLVPNGSESDHCSSLYNLASDGSQGNEAPQLFPYQWE 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02188 387 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 49 372 IPR044817 GO:0003677
Vivi3g02188 387 SUPERFAMILY SBT domain 100 181 IPR036893 GO:0003677|GO:0005634
Vivi3g02188 387 MobiDBLite consensus disorder prediction 364 387 - -
Vivi3g02188 387 MobiDBLite consensus disorder prediction 163 188 - -
Vivi3g02188 387 ProSiteProfiles Zinc finger SBP-type profile. 99 176 IPR004333 GO:0003677
Vivi3g02188 387 MobiDBLite consensus disorder prediction 364 380 - -
Vivi3g02188 387 Pfam SBP domain 102 175 IPR004333 GO:0003677
Vivi3g02188 387 Gene3D - 93 163 IPR036893 GO:0003677|GO:0005634
Vivi3g02188 387 FunFam Squamosa promoter-binding-like protein 14 93 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02188 Vivi-Chr3 36100196 36103021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02188 1 387 SBP-box Gene Family AT5G50670 40.196 4.88e-66 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi3g02188 SBP 3.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02188 - - gmx:100787407 426.402