Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02178 ATGGAGAACAACAACAACAACCACAACCAACAACAACAAACCCAATATCCACCTCCGCAACCCACGGCGGCCACTCCTCCACCATTCCAACACCTCTTACAGCAACAACAGCAACAGCTTCAAATGTTCTGGTCCTACCAAAGACAAGAAATCGAACACGTCAACGACTTCAAAAACCACCAACTCCCATTAGCACGCATTAAGAAAATCATGAAAGCCGACGAAGACGTCCGCATGATCTCCGCCGAAGCACCCATCCTCTTCGCTAAAGCCTGCGAGCTTTTCATTCTCGAACTCACCATTCGCTCTTGGCTTCATGCGGAAGAGAATAAACGACGGACCTTGCAGAAAAACGACATCGCTGCTGCTATTACGAGAACCGATATTTTTGATTTTTTGGTTGATATTGTTCCGAGAGATGAGATTAAAGATGAAGCTACCATTGTTGGGGCTACTGCGAGTGGTGTTCCTTATTATTATCCTCCTATGGGGCAACCTGCCGGGATGATGATTGGTCGTCCGGCGGTTGATCCGGCTACGGGGGTTTATGTTCAGCCGCCTTCTCAGGCTTGGCAGTCTGTTTGGCAGACTGGTGCGGATGATGGTTCGTATGCTGCTGCCGGTGGTGGTGCCAGTGGTCACCACAATGTCGATGGCTAG 660 0.4955 MENNNNNHNQQQQTQYPPPQPTAATPPPFQHLLQQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEATIVGATASGVPYYYPPMGQPAGMMIGRPAVDPATGVYVQPPSQAWQSVWQTGADDGSYAAAGGGASGHHNVDG 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02178 219 FunFam Nuclear transcription factor Y subunit gamma 30 139 - -
Vivi3g02178 219 Pfam Core histone H2A/H2B/H3/H4 3 124 IPR007125 GO:0003677
Vivi3g02178 219 SUPERFAMILY Histone-fold 4 133 IPR009072 GO:0046982
Vivi3g02178 219 Gene3D Histone, subunit A 28 139 IPR009072 GO:0046982
Vivi3g02178 219 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 22 152 - -
Vivi3g02178 219 MobiDBLite consensus disorder prediction 1 18 - -
Vivi3g02178 219 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02178 Vivi-Chr3 35957243 35959653 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02178 29 202 CCAAT-HAP5 Transcription Factor Family AT3G48590 86.339 1.73e-103 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vivi3g02178 Histone 3.4e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02178 - - gmx:100818447 336.65