Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02162 ATGCTTAATGGACTGGCGGATACATGGCCTGCCAGGCATAAATGGACAATTGATCAGTTGTTACTAAACTATGGAGACGTGGCGTTTAAAATTTCTCAAAGGAGTTCCAAAAAGATCTCCATGAAGTTCAAGGATTATGTCTCATACATGAAAGTTCAACATGATGAAGATCCATTGTATATTTTTGACGAAAAGTTTGGCGAACATGCACCTAGCTTATTGAAGGATTACAGCGTGCCTCATCTTTTTCAAGAAGACTTCTTTGATATCTTAGATATAGAGAAACGACCATCCTATAGGTGGCTCATAATTGGACCACAGAGATCTGGTGCCTCTTGGCATGTCGATCCAGCTCTTACAAGTGCATGGAACACTCTGCTTTCTGGCCGTAAAAGGTGGGCGCTATATCCTCCTGGAAAAGTGCCTTTAGGTGTTACAGTACATGTTAACGATGAAGATGGTGATGTCAGTATTGAGACTCCATCATCATTGCAGTGGTGGCTAGATTTTTATCCTCTTCTTGCTGACGAAGACAAGCCAATTGAATGTACACAACTACCTGGAGAGACAATTTATGTTCCCAGTGGATGGTGGCACTGTATTTTAAATTTGGAAACAACTATTGCAGTCACGCAGAATTTTGTGAATTCTAATAACTTCGAATTTGTATGTTTGGATATGGCACCTGGTTATCGTCATAAAGGAGTTTGTCGTGTAGGTTTGCTTGCTCTTGAAGAAGATGTTTATGAAAATGGCATACAGGACATGTCATGTAATGAAGAAAATTTAAGTTATTCTGATTTGTCAAGGAAAGAGAAAAGGCCCAAAACTCTGAAAGATGTAGACGATCTATGTTTTGAAAGTGAATTAAGTGCCGTAGCTAGAAGCTATAACTTATGGAAAAGCGGATTTTCTTATGATATTAATTTCTTATCCATGTTTTTGGATAAGGATAGAGACCACTACAGTTCTGAGTGGAGCACAGGCAACACCATTGGTCAACGAGAACTAAGAGAATGGTTATCCAAGCTTTGGATTCAAAAACCAGAAATGAGAGATCTAATATGGAAGGGAGCTTGTATTGCGCTAAATGCAGATAAGTGGTTAGAGTGCCTGTCTAAAATTTGTGCCTTCAATAATTTGCCCCTTCCAACTGATGATGAAAGACTTCCTGTTGGTACGGGTAGCAATCCTGTTTATCTAGTGGGGAACTATGTTGTAAAGATTTTTGTCGAAGGAGGACTGGAAGCTTGCCTTTATTGTTTAGGCACAGAGCTAGAATTTAATAGTTTGCTGCTTGAAGCCAACTCCTCTATCAGGAAACATATTCCTAGTGTTATGGCCAGCGGGGTTGTTTATCTTGAAGACGGGTCCTACACAAATTTAAGTTGGGATGGAAAAGGAGTTCCCAGTGTCATTTCGAAGACCAATATTATCACAGAAAAATGCAACGTTGATGGTTTCCCATTTGGGGTTTGGGGCAAGAAACTGTTAGAGTATAGGAATGCTGGGATTCCGGTGGATGGATCAATTAGTTTAGCCTGTAACTCAAGCATATGGCCATATGTGATAACTAAGAGATGTGAAGGGAATATGTTTGCAGACTTAAGAGACAGCTTATCGAGAGAAGATGCAACAAACTTGGCCTCCTTCTTGGGGGAGCAACTGTGCCATATTCACCTTTTGCCACATCCGCCTTTAAATAATTCATTTATATCTGATATTGAACATGAACTAAGCTGGTCTGAGGAAAATGATTGTATTTCAAATGTTAATTGTAAATCAAACAATGCAGCAGAATGGGGAATCATCACCAGAATTTTAACAAAGAAGAGGAAGGATGTCTCAAGTCGTTTGACCAAGTGGGGGGATCCAATTCCTAGCAAACTGATTGAGAAAATTGAGGAATATATCCCATCTGATTTATCTAAGCTGCTAAATATAAATGAGAATTTCTCAAGTGGTGCTTCTAAACCTTGCTCCTGGATACACACTGACATTATGGATGATAATATTTACATGGAACCGTCATTGGTTTGCTCTACCTCCAGTGGGAATACAGAAGATGCTGCCCAGGTGGACAATGGTTTATTGAGTGACCACGATGGAGTGAAATCCTGGTGTCCCAGTTACATCCTTGACTTCAGTGATCTTTCTATTGGAGATCCTATTTTCGACTTGATACCAATTTATTTAGATGTGTTTAGAGGCGATTCGTATCTCCTTAAGAAATTTTTAGAAAGTTACAAACTTCCTTTTCCGTGCAACATATCGAAGTGCGAGTCGACAGAGGATGGTCAAAAGTTTGGTCGACTTTCATATGCTGCTATGTGTTATTGTATTTTGCATGATGATAATGTCTTGGGAGCTATTTTTAGCCTATGGGAAGAACTAACATCATCAGAGTCATGGGAAGAAGTTGAGATGACGGTATGGGGAGAGTTGAACAATTACAAAGGCTTTCTTTGA 2469 0.3949 MLNGLADTWPARHKWTIDQLLLNYGDVAFKISQRSSKKISMKFKDYVSYMKVQHDEDPLYIFDEKFGEHAPSLLKDYSVPHLFQEDFFDILDIEKRPSYRWLIIGPQRSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNDEDGDVSIETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCILNLETTIAVTQNFVNSNNFEFVCLDMAPGYRHKGVCRVGLLALEEDVYENGIQDMSCNEENLSYSDLSRKEKRPKTLKDVDDLCFESELSAVARSYNLWKSGFSYDINFLSMFLDKDRDHYSSEWSTGNTIGQRELREWLSKLWIQKPEMRDLIWKGACIALNADKWLECLSKICAFNNLPLPTDDERLPVGTGSNPVYLVGNYVVKIFVEGGLEACLYCLGTELEFNSLLLEANSSIRKHIPSVMASGVVYLEDGSYTNLSWDGKGVPSVISKTNIITEKCNVDGFPFGVWGKKLLEYRNAGIPVDGSISLACNSSIWPYVITKRCEGNMFADLRDSLSREDATNLASFLGEQLCHIHLLPHPPLNNSFISDIEHELSWSEENDCISNVNCKSNNAAEWGIITRILTKKRKDVSSRLTKWGDPIPSKLIEKIEEYIPSDLSKLLNINENFSSGASKPCSWIHTDIMDDNIYMEPSLVCSTSSGNTEDAAQVDNGLLSDHDGVKSWCPSYILDFSDLSIGDPIFDLIPIYLDVFRGDSYLLKKFLESYKLPFPCNISKCESTEDGQKFGRLSYAAMCYCILHDDNVLGAIFSLWEELTSSESWEEVEMTVWGELNNYKGFL 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02162 822 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 2 394 - -
Vivi3g02162 822 SUPERFAMILY Clavaminate synthase-like 2 223 - -
Vivi3g02162 822 FunFam F-box protein At1g78280 1 216 - -
Vivi3g02162 822 ProSiteProfiles JmjC domain profile. 68 231 IPR003347 -
Vivi3g02162 822 Gene3D Cupin 1 216 - -
Vivi3g02162 822 Pfam Cupin-like domain 3 218 IPR041667 -
Vivi3g02162 822 SUPERFAMILY Protein kinase-like (PK-like) 520 752 IPR011009 -
Vivi3g02162 822 Pfam Phosphotransferase enzyme family 501 731 IPR002575 -
Vivi3g02162 822 SMART cupin_9 59 226 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02162 Vivi-Chr3 35676830 35685709 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02162 1 818 Glycosyltransferase AT1G78280 59.807 0.0 1006
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi3g02162 APH 5e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02162 - - tpra:123918034 1546.18