Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02161 ATGGAGGCTCAAGCTCACAATCCGAGAGATCGCAGAATAGACGGTCTTGGAGATCTTCGAGTTCTTCCCGATGAAATCCTCTGCTCAATTTTGGAGCGACTCACTCCTCGAGATGCCGCACGCGTCGCTTGCGTTAGCAGTGTGATGTATATACTGTCCAATGAAGAACCATTGTGGATGAGTCTATGCCTAAAAGGAGCATCTGGTTTTCTTGAATACAAAGGCTCTTGGAAGAAAACTGCTCTGCATAATGAGAATCCGCCGGACAAGTACAAAGAGGGCCATAGACAGCCTTTACATTTTGATGGGTTCAACTCTTTATTTTTGTATCGGAGATTATACCGGTGTAATACCACATTGGATACATTTTATACAGAAGGTGGAAATGTGGAAAGAATAAATGACATCTCATTGAAGGACTTCTATAACGAGTATGACATGAAGAAACCGGTCATGCTTAATGGACTGGCGGATACATGGCCTGCCAGGCATAAATGGACAATTGATCAGTTGTTACTAAACTATGGAGACGTGGCGTTTAAAATTTCTCAAAGGAGTTCCAAAAAGATCTCCATGAAGTTCAAGGATTATGTCTCATACATGAAAGTTCAACATGATGAAGATCCATTGTATATTTTTGACGAAAAGTTTGGCGAACATGCACCTAGCTTATTGAAGGATTACAGCGTGCCTCATCTTTTTCAAGAAGACTTCTTTGATATCTTAGATATAGAGAAACGACCATCCTATAGGTGGCTCATAATTGGACCACAGAGATCTGGTGCCTCTTGGCATGTCGATCCAGCTCTTACAAGTGCATGGAACACTCTGCTTTCTGGCCGTAAAAGGTGGGCGCTATATCCTCCTGGAAAAGTGCCTTTAGGTGTTACAGTACATGTTAACGATGAAGATGGTGATGTCAGTATTGAGACTCCATCATCATTGCAGTGGTGGCTAGATTTTTATCCTCTTCTTGCTGACGAAGACAAGCCAATTGAATGTACACAACTACCTGGAGAGACAATTTATGTTCCCAGTGGATGGTGGCACTGTATTTTAAATTTGGAAACAACTATTGCAGTCACGCAGAATTTTGTGAATTCTAATAACTTCGAATTTGTATGTTTGGATATGGCACCTGGTTATCGTCATAAAGGAGTTTGTCGTGTAGGTTTGCTTGCTCTTGAAGAAGATGTTTATGAAAATGGCATACAGGACATGTCATGTAATGAAGAAAATTTAAGTTATTCTGATTTGTCAAGGAAAGAGAAAAGGCCCAAAACTCTGAAAGATGTAGACGATCTATGTTTTGAAAGTGAATTAAGTGCCGTAGCTAGAAGCTATAACTTATGGAAAAGCGGATTTTCTTATGATATTAATTTCTTATCCATGTTTTTGGATAAGGATAGAGACCACTACAGTTCTGAGTGGAGCACAGGCAACACCATTGGTCAACGAGAACTAAGAGAATGGTTATCCAAGCTTTGGATTCAAAAACCAGAAATGAGAGATCTAATATGGAAGGGAGCTTGTATTGCGCTAAATGCAGATAAGTGGTTAGAGTGCCTGTCTAAAATTTGTGCCTTCAATAATTTGCCCCTTCCAACTGATGATGAAAGACTTCCTGTTGGTACGGGTAGCAATCCTGTTTATCTAGTGGGGAACTATGTTGTAAAGATTTTTGTCGAAGGAGGACTGGAAGCTTGCCTTTATTGTTTAGGCACAGAGCTAGAATTTAATAGTTTGCTGCTTGAAGCCAACTCCTCTATCAGGAAACATATTCCTAGTGTTATGGCCAGCGGGGTTGTTTATCTTGAAGACGGGTCCTACACAAATTTAAGTTGGGATGGAAAAGGAGTTCCCAGTGTCATTTCGAAGACCAATATTATCACAGAAAAATGCAACGTTGATGGTTTCCCATTTGGGGTTTGGGGCAAGAAACTGTTAGAGTATAGGAATGCTGGGATTCCGGTGGATGGATCAATTAGTTTAGCCTGTAACTCAAGCATATGGCCATATGTGATAACTAAGAGATGTGAAGGGAATATGTTTGCAGACTTAAGAGACAGCTTATCGAGAGAAGATGCAACAAACTTGGCCTCCTTCTTGGGGGAGCAACTGTGCCATATTCACCTTTTGCCACATCCGCCTTTAAATAATTCATTTATATCTGATATTGAACATGAACTAAGCTGGTCTGAGGAAAATGATTGTATTTCAAATGTTAATTGTAAATCAAACAATGCAGCAGAATGGGGAATCATCACCAGAATTTTAACAAAGAAGAGGAAGGATGTCTCAAGTCGTTTGACCAAGTGGGGGGATCCAATTCCTAGCAAACTGATTGAGAAAATTGAGGAATATATCCCATCTGATTTATCTAAGCTGCTAAATATAAATGAGAATTTCTCAAGTGGTGCTTCTAAACCTTGCTCCTGGATACACACTGACATTATGGATGATAATATTTACATGGAACCGTCATTGGTTTGCTCTACCTCCAGTGGGAATACAGAAGATGCTGCCCAGGTGGACAATGGTTTATTGAGTGACCACGATGGAGTGAAATCCTGGTGTCCCAGTTACATCCTTGACTTCAGTGATCTTTCTATTGGAGATCCTATTTTCGACTTGATACCAATTTATTTAGATGTGTTTAGAGGCGATTCGTATCTCCTTAAGAAATTTTTAGAAAGTTACAAACTTCCTTTTCCGTGCAACATATCGAAGTGCGAGTCGACAGAGGATGGTCAAAAGTTTGGTCGACTTTCATATGCTGCTATGTGTTATTGTATTTTGCATGATGATAATGTCTTGGGAGCTATTTTTAGCCTATGGGAAGAACTAACATCATCAGAGTCATGGGAAGAAGTTGAGATGACGGTATGGGGAGAGTTGAACAATTACAAAGGCTTTCTTTGA 2922 0.4004 MEAQAHNPRDRRIDGLGDLRVLPDEILCSILERLTPRDAARVACVSSVMYILSNEEPLWMSLCLKGASGFLEYKGSWKKTALHNENPPDKYKEGHRQPLHFDGFNSLFLYRRLYRCNTTLDTFYTEGGNVERINDISLKDFYNEYDMKKPVMLNGLADTWPARHKWTIDQLLLNYGDVAFKISQRSSKKISMKFKDYVSYMKVQHDEDPLYIFDEKFGEHAPSLLKDYSVPHLFQEDFFDILDIEKRPSYRWLIIGPQRSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNDEDGDVSIETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCILNLETTIAVTQNFVNSNNFEFVCLDMAPGYRHKGVCRVGLLALEEDVYENGIQDMSCNEENLSYSDLSRKEKRPKTLKDVDDLCFESELSAVARSYNLWKSGFSYDINFLSMFLDKDRDHYSSEWSTGNTIGQRELREWLSKLWIQKPEMRDLIWKGACIALNADKWLECLSKICAFNNLPLPTDDERLPVGTGSNPVYLVGNYVVKIFVEGGLEACLYCLGTELEFNSLLLEANSSIRKHIPSVMASGVVYLEDGSYTNLSWDGKGVPSVISKTNIITEKCNVDGFPFGVWGKKLLEYRNAGIPVDGSISLACNSSIWPYVITKRCEGNMFADLRDSLSREDATNLASFLGEQLCHIHLLPHPPLNNSFISDIEHELSWSEENDCISNVNCKSNNAAEWGIITRILTKKRKDVSSRLTKWGDPIPSKLIEKIEEYIPSDLSKLLNINENFSSGASKPCSWIHTDIMDDNIYMEPSLVCSTSSGNTEDAAQVDNGLLSDHDGVKSWCPSYILDFSDLSIGDPIFDLIPIYLDVFRGDSYLLKKFLESYKLPFPCNISKCESTEDGQKFGRLSYAAMCYCILHDDNVLGAIFSLWEELTSSESWEEVEMTVWGELNNYKGFL 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02161 973 Gene3D - 16 92 - -
Vivi3g02161 973 FunFam F-box protein At1g78280 110 367 - -
Vivi3g02161 973 ProSiteProfiles F-box domain profile. 16 62 IPR001810 GO:0005515
Vivi3g02161 973 SUPERFAMILY Clavaminate synthase-like 118 374 - -
Vivi3g02161 973 ProSiteProfiles JmjC domain profile. 219 382 IPR003347 -
Vivi3g02161 973 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 16 545 - -
Vivi3g02161 973 Pfam F-box-like 21 65 IPR001810 GO:0005515
Vivi3g02161 973 SMART cupin_9 210 377 IPR003347 -
Vivi3g02161 973 SUPERFAMILY Protein kinase-like (PK-like) 671 903 IPR011009 -
Vivi3g02161 973 Gene3D Cupin 113 367 - -
Vivi3g02161 973 SUPERFAMILY F-box domain 10 68 IPR036047 GO:0005515
Vivi3g02161 973 SMART fbox_2 22 62 IPR001810 GO:0005515
Vivi3g02161 973 Pfam Cupin-like domain 148 369 IPR041667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02161 Vivi-Chr3 35676830 35686784 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02161 9 969 Glycosyltransferase AT1G78280 60.472 0.0 1187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi3g02161 Cupin_8 4.3e-21 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02161 - - tpra:123918034 1813.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02161 3 35676830 35686784 Vivi3g02161 3 35676830 35686784 ECH