Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02158 ATGCCGATCATCACAAGCATTACAAGAGAATATGTTGGCCAGCCAATAAGATGCAAAGCTGCAATATGCAGAAGTCCAGGTGAACCTCTTGTTATAGAAGAAATTGAGTTAGAGCCACCAAAATCATGGGAAGTAAGGATCAAAATTTTGTACACATCTCTCTGTCATTCTGATGTCACTTTTTGGAAAATGCATCCTTCTTCACCTGCTGCTATGTTTCCAAGAATTCTCGGACACGAAGCCGTCGGGGTTGTGGAGAGTGTAGGAGAACATGTAGAAGTGAAAGAAGGAGATTTAGTTGTGCCAGTGTTTCAACCAAACTGTGGAGAATGCAGAGATTGTGAGAGTCCAAAAAGCAACAATTGCAGCAAGTTCGGAACCAAACGAATCGTTAACATGCCAAGAGACGGAACAAGTAGGTTTAAGGACATGAATGGAGAAGTGGTGCATAATTTATTTGGTATAAGCAGTTTCTCTGAGTACACAGTGGTTGATGTAACACATGTGGTGAAAATTAACCATGATTTTCCTCTTGATAAGGCTTGCTTGCTCAGTTGCGGTGTTTCCACAGGGGTAGGGGCGGTGTGGAAAGTTGCTGATGTAGAAAAAGGGTCCACAGTCGCTGTTTTTGGCCTTGGTGCTGTTGGTCTAGCTGTAGCTGTAGCAGCAAAGCAAAGAGGAGCTTCAAAGATTATAGGCGTCGATCTAAATGAGGACAAATTTGAAATAGGAAAACCATTTGGAATAACTGATTTCGTGAATCCTTCCAGTTGCAAAGACAAACCTGTGAGCGAGGTGATTAAGGATATGACAAATGGAGGTGCTGATTACTGCTTCGAGTGCATTGGCTTGGCATCATTAATGACAGAGGCTTTCAATAGCAGCAGAGAAGGTTGGGGGAAGACAGTGATAATAGGGGTGGAAATGCACGGATCGCCATTGACTCTAAGTCCTTATGACATACTCAAAGGCAAAACTATCACTGGATCACTATTTGGAGGTTTGAAACCAAAATCTGATATTCCCCTCCTTGCTCAGAAGTACTTAGACAATGAACTTAACTTGGATGGTTTCATAACACAAGAGGTGGACTTCAAAGATATTAACAAAGCTTTTGATTATCTGATTCAAGGGAAGAGCATTCGTTGCATTATAAGGATGGATCATTAA 1170 0.4171 MPIITSITREYVGQPIRCKAAICRSPGEPLVIEEIELEPPKSWEVRIKILYTSLCHSDVTFWKMHPSSPAAMFPRILGHEAVGVVESVGEHVEVKEGDLVVPVFQPNCGECRDCESPKSNNCSKFGTKRIVNMPRDGTSRFKDMNGEVVHNLFGISSFSEYTVVDVTHVVKINHDFPLDKACLLSCGVSTGVGAVWKVADVEKGSTVAVFGLGAVGLAVAVAAKQRGASKIIGVDLNEDKFEIGKPFGITDFVNPSSCKDKPVSEVIKDMTNGGADYCFECIGLASLMTEAFNSSREGWGKTVIIGVEMHGSPLTLSPYDILKGKTITGSLFGGLKPKSDIPLLAQKYLDNELNLDGFITQEVDFKDINKAFDYLIQGKSIRCIIRMDH 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02158 389 Pfam Zinc-binding dehydrogenase 214 337 IPR013149 -
Vivi3g02158 389 SUPERFAMILY GroES-like 12 197 IPR011032 -
Vivi3g02158 389 Pfam Alcohol dehydrogenase GroES-like domain 44 172 IPR013154 -
Vivi3g02158 389 FunFam S-(hydroxymethyl)glutathione dehydrogenase 191 330 - -
Vivi3g02158 389 Gene3D - 191 330 - -
Vivi3g02158 389 FunFam Alcohol dehydrogenase 6 21 205 - -
Vivi3g02158 389 PANTHER ALCOHOL DEHYDROGENASE 13 385 - -
Vivi3g02158 389 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 177 350 IPR036291 -
Vivi3g02158 389 SUPERFAMILY GroES-like 338 386 IPR011032 -
Vivi3g02158 389 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 78 92 IPR002328 GO:0008270|GO:0016491
Vivi3g02158 389 Gene3D - 21 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02158 Vivi-Chr3 35589446 35593964 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02158 44 256 Monolignol Biosynthesis Gene Families AT4G37970 27.848 6.30e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02158 K00121 - cave:132189734 553.132