Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02146 ATGACCTTATCCATTCCAACACAAACCTCCCAAACTCTAATGGCGCTTCTACGTATTCCCTCTCCTCAATTATCCACAAAACACCACCACGATGGACCAATAATAACCTCTTTCTCCTCCATAGACTTCAACAAGAACAAAAACTATTCCATCAACCCCAAATCCATTCACTCTCTACGTCTATCTATTACTCATACACAAACCCTTATTACAACCAAACAACACCCCAATTTTACTCTCAGATTTTCCCAACAACAACAACAACAAACTCAAATAACCGAGGAAGATAACACACAAGAATTGTCTACTACTAGGTTGCTTGCTCAGAATGTTCCATGGACAAGTACTGCCGAAGATATTCGTACTTTGTTTGAAAAACATGGGAAAGTCGTTGATGTTGAGCTTTCTATGTATAATAAGAGCAGAAGCAGGGGTTTAGCGTTTGTGGAAATGGCTTCCCCAGAAGAGGCTCTTGCAGTTTTCAATACTCTCCAATCATATGAGTATGAAGGCCGCGTAATAAATCTCAAATATGCTCGGCCTAGGAAGGAGAAAACACCGCCACCAGTGGAACATAAGCCAATAACATTTAACTTGTTTGTTTCAAACTTGTCCTATGAAACGAGGTCTAAAGATCTCAAAGAGTTTTTTGACTCGGGAGCTAGTGGAGTTGTTTCTGCAGAGGTTATATTCCGTGAGAATCCTAGAACACCATCTGGTTATGGATTTGTGTCCTTCAAGACCAAGAAAGAAGCGAATGATGCTCTTTCCGAGTTTCAAGGAAAGAAGTTGAAGGGAAGGCCAATCAGGGTTGCACCTAGTAAGCGATTTATTCAACTGGCAGAGGAGAGTGCAGTGTCCGAAGATACATCATCTGAGTCGAGCGCGAGCGAGGCAGTAACCGAGAAAGCTGATTGA 918 0.4183 MTLSIPTQTSQTLMALLRIPSPQLSTKHHHDGPIITSFSSIDFNKNKNYSINPKSIHSLRLSITHTQTLITTKQHPNFTLRFSQQQQQQTQITEEDNTQELSTTRLLAQNVPWTSTAEDIRTLFEKHGKVVDVELSMYNKSRSRGLAFVEMASPEEALAVFNTLQSYEYEGRVINLKYARPRKEKTPPPVEHKPITFNLFVSNLSYETRSKDLKEFFDSGASGVVSAEVIFRENPRTPSGYGFVSFKTKKEANDALSEFQGKKLKGRPIRVAPSKRFIQLAEESAVSEDTSSESSASEAVTEKAD 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02146 305 Gene3D - 66 187 IPR012677 -
Vivi3g02146 305 MobiDBLite consensus disorder prediction 284 299 - -
Vivi3g02146 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 276 IPR000504 GO:0003723
Vivi3g02146 305 SUPERFAMILY RNA-binding domain, RBD 94 188 IPR035979 GO:0003676
Vivi3g02146 305 SMART rrm1_1 105 177 IPR000504 GO:0003723
Vivi3g02146 305 SMART rrm1_1 198 272 IPR000504 GO:0003723
Vivi3g02146 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 181 IPR000504 GO:0003723
Vivi3g02146 305 PANTHER OS02G0815200 PROTEIN 67 273 - -
Vivi3g02146 305 SUPERFAMILY RNA-binding domain, RBD 196 276 IPR035979 GO:0003676
Vivi3g02146 305 MobiDBLite consensus disorder prediction 282 305 - -
Vivi3g02146 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 174 IPR000504 GO:0003723
Vivi3g02146 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 270 IPR000504 GO:0003723
Vivi3g02146 305 Gene3D - 189 279 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02146 Vivi-Chr3 35447703 35449704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02146 104 276 Eukaryotic Initiation Factors Gene Family AT4G34110 25.683 1.72e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02146 - - gmx:100790439 287.345