Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02144 ATGGCACTTGAAACCGTTGTTTTTCCTCAAGATCCATTCAATTATAGTTATAAGGATAATAATTACTTCAACTTATTAAGTAATGACTATGGTAATAGTACTTTACAAGCTGAAGAACAAGAGAATGTTCTCCTAGGAATCATCAACAACAACAACAACAACGTAGTAGAACAACAACAACAACAACAACAAAATCTCCATGCAAATTGGGATTCTTGTTCTGTTAAGGATCAATGGGAATATTCACACTCTTCTTCTCCTGAAATCTGCACCGTTGATCAAACTATCAAAGCTCCAATGGAAGCAGCTACAGAAACTGCCACGTGTCGGAGAAAACGACGTCGTATTAAGAGTGCGAAGAACAAAGAGGAAATTGAAAACCAAAGGATGACTCATATCACTGTTGAAAGAAATCGTAGAAAACAAATGAATGAGTACTTGAACGTGCTAAGATCTTTGATGCCTTCTTCTTATGTTCAAAGGGGTGACCAGGCTTCAATTATTGGGGGAGCAATAAACTTTGTAAAAGAGTTAGAACAACTTTTACAGTCGATGGGGGGCCAGAAGAAAACGAAGGAAAACATATCCTTAAATGGACAACCTTTTTCTGAGTTTTTCACTTTTCCTCAGTACACAACTCACAACAACAATAACAACAAACTTACTATGGAACAAAAACAATGTGCTGTGGCAGACATTGAAGTCACCATGGTAGATACTCATGCCAACATCAAAATACTGTCCAAGAAACAAACCGGACAGCTTATGAAGATCGTTGTTGGGTTGCAAAATCTTAGACTCACCATTCTTCATCTCAATGTTACAACTCTTGATCAAATGGTTCTTTACTCAGTCAGTGTCAAGGTAGAGGAGGGGAGTCAGCTGAATAGTGTGGATGAAATTGCGGCGGCTGTGAATCAACTATTAAGGACAGTTCAACAAGAGTTGGCTTATCAATGA 960 0.3802 MALETVVFPQDPFNYSYKDNNYFNLLSNDYGNSTLQAEEQENVLLGIINNNNNNVVEQQQQQQQNLHANWDSCSVKDQWEYSHSSSPEICTVDQTIKAPMEAATETATCRRKRRRIKSAKNKEEIENQRMTHITVERNRRKQMNEYLNVLRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMGGQKKTKENISLNGQPFSEFFTFPQYTTHNNNNNKLTMEQKQCAVADIEVTMVDTHANIKILSKKQTGQLMKIVVGLQNLRLTILHLNVTTLDQMVLYSVSVKVEEGSQLNSVDEIAAAVNQLLRTVQQELAYQ 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02144 319 SMART finulus 133 184 IPR011598 GO:0046983
Vivi3g02144 319 Pfam Helix-loop-helix DNA-binding domain 128 179 IPR011598 GO:0046983
Vivi3g02144 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 190 IPR036638 GO:0046983
Vivi3g02144 319 Gene3D - 117 194 IPR036638 GO:0046983
Vivi3g02144 319 PANTHER MAX DIMERIZATION, MAD 59 314 - -
Vivi3g02144 319 CDD bHLH_AtFAMA_like 130 193 - -
Vivi3g02144 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 178 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02144 Vivi-Chr3 35397155 35399304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02144 1 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.419 6.86e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi3g02144 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02144 - - gmx:100805420 367.466