Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02143 ATGAACACTTTCCCTCTCAAATTTCATTTCAATTCCAATTATGCCCTTCCCTACCTCCTCCTTCTCTCCACCACCCTCTTCCCACCGCCAACCACCGCACAAATTCCGAATGACCTACCACCACCACCGCCAGGCAAAATCTCCGCCCTCAAATTCGACAAATCCATGGCCATCGTCCTAGTCATCCTAGTCGTCGTGTTTTTCATCCTCGGTTTCCTCTCCGTCTACACTCGCCAGTGCGCAGAGCAAAGGATGAGAGGAAGATTCGACCTGTCGGTTCCGATCGTCGGCAGCCACCGGAGGCAACGCGGACTCGACTCCGAAATCATCGAAACGTTTCCTACCTTTGTTTACTCCGCCGTGAAAGGACACAAAATCGGAAGAACCTTGCTAGAATGCGCCGTGTGTTTAAACGAGTTCCAAGATGATGAAACGCTGCGTTTGATTCCTAATTGTAGCCACGTGTTTCATCCTGAATGCATCGATGCTTGGCTTGTTAATCACTCCACTTGCCCCGTTTGTCGCGCCAATTTGATTCCGAAACCCGGAGAATCTTCTTTCGTTTCGGTTCTAATTCCGGATCCGGATATATCCGATTCAGATAACCCGACCCGGAGTAACAATGATTCCGAAATTAATCTTTCACCTTCTCCTAAAGTGAATTATTCAGTTACACCGAACCGGACCCGACCGATTCGGTCAAGCTCAACCGGTTTTAAAATTGGAAGCTGGTTTCCGCGATCACATTCCACGGGTCATTCTCTGGTTCAAGAAGGTGAGAATTATGAGCGGTTCACTTTGAGATTACCAGAGGAGGTGAGGAACCGGTTGGTGGGTTCAACACCGAGCCACGTGGCAAGTTGTGGTGTTACTTTTACTCGTGAGGGGAGTGGGAGGAGGGGTTTTAGAACAAGGAGTGTGGGGAGTAGTGCTCCTGGGAGGAACTATGAGTGGTTTAACCGGCCGGACCGGAGGGGATTTTCTTGGACGCCGCCGTTTATGGGTCGAACCGGTTCGAGTTGGTTGAAGAATAAGTCGCCTGGGAAATTGGATGATGTGGGAGAACGTTCTTCTGATCGGTTGTTTGCAGGTAATCGGGGTTAG 1104 0.4991 MNTFPLKFHFNSNYALPYLLLLSTTLFPPPTTAQIPNDLPPPPPGKISALKFDKSMAIVLVILVVVFFILGFLSVYTRQCAEQRMRGRFDLSVPIVGSHRRQRGLDSEIIETFPTFVYSAVKGHKIGRTLLECAVCLNEFQDDETLRLIPNCSHVFHPECIDAWLVNHSTCPVCRANLIPKPGESSFVSVLIPDPDISDSDNPTRSNNDSEINLSPSPKVNYSVTPNRTRPIRSSSTGFKIGSWFPRSHSTGHSLVQEGENYERFTLRLPEEVRNRLVGSTPSHVASCGVTFTREGSGRRGFRTRSVGSSAPGRNYEWFNRPDRRGFSWTPPFMGRTGSSWLKNKSPGKLDDVGERSSDRLFAGNRG 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02143 367 CDD RING-H2_EL5-like 132 175 - -
Vivi3g02143 367 MobiDBLite consensus disorder prediction 199 232 - -
Vivi3g02143 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 180 IPR013083 -
Vivi3g02143 367 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Vivi3g02143 367 Pfam Ring finger domain 132 175 IPR001841 -
Vivi3g02143 367 PANTHER RING FINGER DOMAIN-CONTAINING 41 184 - -
Vivi3g02143 367 MobiDBLite consensus disorder prediction 338 367 - -
Vivi3g02143 367 MobiDBLite consensus disorder prediction 348 367 - -
Vivi3g02143 367 MobiDBLite consensus disorder prediction 192 232 - -
Vivi3g02143 367 SUPERFAMILY RING/U-box 132 182 - -
Vivi3g02143 367 SMART ring_2 133 174 IPR001841 -
Vivi3g02143 367 FunFam E3 ubiquitin-protein ligase ATL6 95 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02143 Vivi-Chr3 35295861 35300839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02143 10 337 Rapid Response to Elicitors AT3G05200 38.235 7.50e-62 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02143 K10664 - gmx:100807828 354.369