Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02121 ATGGCGCTTCTACGTATTCCCTCTCCTCAATTATCCACAAAACAACAACACCATCACCATGGACCAATAATAACCTCTTTCGACTTCAACAAGAACATAAACTATTCCATCAACCTAAGACCCATTCCCTCTCTACGTCTATCTATTACTCATACACAAACCCTTATTACAACCAAACAACACGCCAATTTTACTCTCAGATTTTCCCAACAACAACAACAACAACAAACTCAAATAACCGATGAAGATAACACACAAGAATTGTCTACTACTAGGTTGCTTGCTCAGAATGTTCCGTGGACAAGTACTGCCGAAGATATTCGTACTTTGTTTGAAAAACATGGGAAAGTTGTTGATGTTGAGCTTTCTATGTATAATAAGAGCAGAAGCAGGGGTTTAGCGTTTGTGGAAATGGCTTCCCCAGAAGAGGCTCTTGCAGTTTTCAATACTCTCCAATCATATGAGTATGAAGGCCGCGTAATAAATCTCAAATATGCTCGGCTTAGAAAGGAGAAAACACCGCCACCAGTGGAACATAAGCCAATAACATTTAACTTGTTTGTGGCAAACTTGTCCTATGAAACGAGGTCGAAAGATCTCAAAGAGTTTTTTGACTCAGGAGCTAGTGGAGTTGTTTCTGCAGAGGTTATATTCCGTGAGAATCCTAGAACACCATCTGGTTATGGATTTGTGTCCTTCAAGACCAAGAAAGAAGCGAATGATGCTCTTTCCGAGTTTCAAGGAAAGAAGTTGAAGGGAAGGCCAATCAGGGTTGCACCTAGTAAGCGATTTGTTCAACTGGCAGAGGAGAGTGCAGTGTCCGAAGATACATCATCTGAGTCGAGCGCGAGTGAGGCAGTAACTGAGAAAGCTGATTGA 879 0.4152 MALLRIPSPQLSTKQQHHHHGPIITSFDFNKNINYSINLRPIPSLRLSITHTQTLITTKQHANFTLRFSQQQQQQQTQITDEDNTQELSTTRLLAQNVPWTSTAEDIRTLFEKHGKVVDVELSMYNKSRSRGLAFVEMASPEEALAVFNTLQSYEYEGRVINLKYARLRKEKTPPPVEHKPITFNLFVANLSYETRSKDLKEFFDSGASGVVSAEVIFRENPRTPSGYGFVSFKTKKEANDALSEFQGKKLKGRPIRVAPSKRFVQLAEESAVSEDTSSESSASEAVTEKAD 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02121 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 168 IPR000504 GO:0003723
Vivi3g02121 292 PANTHER OS02G0815200 PROTEIN 69 260 - -
Vivi3g02121 292 SUPERFAMILY RNA-binding domain, RBD 82 174 IPR035979 GO:0003676
Vivi3g02121 292 MobiDBLite consensus disorder prediction 269 292 - -
Vivi3g02121 292 MobiDBLite consensus disorder prediction 1 20 - -
Vivi3g02121 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 161 IPR000504 GO:0003723
Vivi3g02121 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 257 IPR000504 GO:0003723
Vivi3g02121 292 SUPERFAMILY RNA-binding domain, RBD 174 264 IPR035979 GO:0003676
Vivi3g02121 292 Gene3D - 176 267 IPR012677 -
Vivi3g02121 292 SMART rrm1_1 185 259 IPR000504 GO:0003723
Vivi3g02121 292 SMART rrm1_1 92 164 IPR000504 GO:0003723
Vivi3g02121 292 MobiDBLite consensus disorder prediction 271 286 - -
Vivi3g02121 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 263 IPR000504 GO:0003723
Vivi3g02121 292 Gene3D - 52 174 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02121 Vivi-Chr3 34912277 34914342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02121 91 263 Eukaryotic Initiation Factors Gene Family AT4G34110 25.683 3.96e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02121 - - gmx:100790439 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02121 3 34912277 34914342 Vivi3g02121 3 34912277 34914342 ECH