Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02115 ATGAACACTTTCCCTCTCAAATTTCATTTCAATTCCAATTATGCCCTCCCCTACCTCCTCCTTCTCTCCACCACCCTCTTCCTACCGCCAACCACCGCACAGATTCCGAATGACCTATCACCACCACCGCCAGGCAAAATCTCCGCCCTCAAATTCGATAAATCCATGGCCATCGTCCTAGTCATCCTAGTCGTCGTGTTTTTCATCCTCGGTTTCCTCTCCGTCTACACTCGCCAGTGCGCAGAGCAAAGGATGAGAGGAAGATTCGACCTATCGGTTCCGATCGTCGGAAGCCACCGGAGACAACGCGGACTCGACTCCGAAATCATCGAAACGTTTCCTACCTTTGTTTACTCCGCCGTGAAAGGACACAAAATCGGAAGAACCCTGCTAGAATGCGCCGTGTGTTTAAACGAGTTCCAAGACGATGAAACGCTGCGTTTGATTCCGAATTGTAGCCACGTGTTTCATCCTGAATGCATCGATGCTTGGCTTGTTAATCACTCCACTTGCCCCGTTTGTCGCGCCAATTTGATTCCGAAACCCGGAGAATCTTCTTTCGTTTCGGTTCTAATTCCGGATCCAGATGTATCCAATTCAGATAACCCGACCCGGAATAACAATGATTCCGAAATTAATCTTTCACCTTCTCCTAAAGTGAATTATTCAGTTACACCGAACCGGGCCCGACCCGTTCGGTCAAGCTCAACCGGTTTTAAAATTGGAAGCTGGTTTCCGCGGTCACATTCCACGGGTCATTCTCTGGTTCAAGAAGGTGAGAATTACGAGCGGTTCACTTTGAGATTACCGGAGGAGGTGAGGAACCGGTTGGTGGGTTCAACACCGAGCCACGTGGCAAGTTGTGGTGTTACGTTTACTCGAGAGGGGAGTGGGAGGAGGGGTTTTAGAACGAGGAGTGTGGGGAGTAGTGCTCCTGGGAGGAACTATGAGTGGTTTAACCGGCCGGACCGGAGGGGATTTTCTTGGACGCCGCCGTTTATGGGTCGAACCGGTTCGAGTTGGTTGAAGAATAAGTCGCCTGGGAAATTGGATGATGTGGGAGAACGGTCTTCTGATCGGTTGTTTGCAGGTAATCGGGGTTAG 1104 0.5036 MNTFPLKFHFNSNYALPYLLLLSTTLFLPPTTAQIPNDLSPPPPGKISALKFDKSMAIVLVILVVVFFILGFLSVYTRQCAEQRMRGRFDLSVPIVGSHRRQRGLDSEIIETFPTFVYSAVKGHKIGRTLLECAVCLNEFQDDETLRLIPNCSHVFHPECIDAWLVNHSTCPVCRANLIPKPGESSFVSVLIPDPDVSNSDNPTRNNNDSEINLSPSPKVNYSVTPNRARPVRSSSTGFKIGSWFPRSHSTGHSLVQEGENYERFTLRLPEEVRNRLVGSTPSHVASCGVTFTREGSGRRGFRTRSVGSSAPGRNYEWFNRPDRRGFSWTPPFMGRTGSSWLKNKSPGKLDDVGERSSDRLFAGNRG 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02115 367 CDD RING-H2_EL5-like 132 175 - -
Vivi3g02115 367 MobiDBLite consensus disorder prediction 192 233 - -
Vivi3g02115 367 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Vivi3g02115 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 180 IPR013083 -
Vivi3g02115 367 Pfam Ring finger domain 132 175 IPR001841 -
Vivi3g02115 367 SUPERFAMILY RING/U-box 132 182 - -
Vivi3g02115 367 PANTHER RING FINGER DOMAIN-CONTAINING 40 184 - -
Vivi3g02115 367 MobiDBLite consensus disorder prediction 338 367 - -
Vivi3g02115 367 MobiDBLite consensus disorder prediction 348 367 - -
Vivi3g02115 367 SMART ring_2 133 174 IPR001841 -
Vivi3g02115 367 FunFam E3 ubiquitin-protein ligase ATL6 95 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02115 Vivi-Chr3 34792666 34797346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02115 10 337 Rapid Response to Elicitors AT3G05200 38.304 8.44e-62 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02115 K10664 - gmx:100807828 360.147