Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02098 ATGAGGAAGAAAAGGAAAGGAAGTGAGACTGATGCTGCATCTACGAATCTGGGGGTTGTTGTTTTGCCTTTGGATCGTGGTTCTGGTTCGGTTGAGTCGTCGAATTTGAAGTCTCATTATTCGTTGGAAGATTGTTGTAGGTTGAAGAAAAGATGTAAAGAAGATGCTGCTACTGAGACTGCTGGTTCTTTTAAGAGTAGGCTTGCTGGCATTGCGACTGCGCCGCCGTTTGGGACGTCGTCTTTGCTTACTCCCAGTAGAGGTTTGAAGAGGAAGATAGGTTGTATTGATGTTGCTACTCAGATGGGAAGGAAGAAGAAGATTGAGGATGATTATGTTAATGGTGAATCGATCGGGCAAGGGAAGTTTGGATCTGTTTATTTGTGTTGGTCTAGGGCTAGTGGAGCGGAGTATGCGTGTAAGACTTTGAGGAAGGGAGAGGAGACGGTTCATCGGGAGGTTGAGATAATGCAGCACTTGTCTGGACATTCTGGGGTTGTGACATTGCAAGCAGTTTATGAAGAAGAGGAATCGTTTCATCTTGTGATGGAGTTGTGCTCTGGGGGACGGCTGATTGATCAAATGGTTAAGGATGGACCTTATTCGGAACAGCGGGCAGCTAACATACTCAAGGAAGTCATGTTAGTCATCAAGTATTGTCATGACATGGGAGTTGTGCACAGAGATATCAAGCCTGAGAATATTCTGCTCACAAAATCAGGAAAGTTGAAGCTTGCGGATTTTGGACTCGCCATGAGAATTTCGGAAGGTCAAAACTTGACTGGATTGGCTGGAAGCCCTGCATATGTTGCTCCCGAAGTATTATCGGGAAAATACTCTGAGAAGGTTGATATATGGAGTGCTGGAGTGCTCCTGCATGCTCTGTTGATTGGCTGCCTTCCATTTCAGGGAGATTCATTGGAAGCTGTTTTTGAGGCTATTAAGACTGTCAAATTAGATTTCCAAGCAGGGATGTGGGAATCAATATCTAAACCTGCACGAGATCTTATTGGGAGAATGCTATCAAGGGATACCTCGGCCAGGATATCAGCTGATGAAGTACTTAGGCATCCATGGATTTTGTTCTACACTGCCCAATCCTTGACGATGCTGCCCATCAAAGCAAAATTGAAGAATCAAACTGGCGGCGTATGTAGACGGCTTATCGCTGCACCAGAACCTAGGTTAGGAGGAAACATGGCAGATAATGGCTCACTTAGCGAGCTTTTAACCTCTGAAAGTTGCAATTCAGAAGATCAGGATGAATGTGCGTTGATTGATGCACTTGCCACTGCAATTTCCCATGTGAGGATATCTGAACCAAAGAGGAGCAGGTTGTGTAGTCCCACCGGCCCCATTGTTCAGCAAGGTTCATCTAACATGAAGGCTAACAACCTTTGTAAAGCATTTTGA 1413 0.4501 MRKKRKGSETDAASTNLGVVVLPLDRGSGSVESSNLKSHYSLEDCCRLKKRCKEDAATETAGSFKSRLAGIATAPPFGTSSLLTPSRGLKRKIGCIDVATQMGRKKKIEDDYVNGESIGQGKFGSVYLCWSRASGAEYACKTLRKGEETVHREVEIMQHLSGHSGVVTLQAVYEEEESFHLVMELCSGGRLIDQMVKDGPYSEQRAANILKEVMLVIKYCHDMGVVHRDIKPENILLTKSGKLKLADFGLAMRISEGQNLTGLAGSPAYVAPEVLSGKYSEKVDIWSAGVLLHALLIGCLPFQGDSLEAVFEAIKTVKLDFQAGMWESISKPARDLIGRMLSRDTSARISADEVLRHPWILFYTAQSLTMLPIKAKLKNQTGGVCRRLIAAPEPRLGGNMADNGSLSELLTSESCNSEDQDECALIDALATAISHVRISEPKRSRLCSPTGPIVQQGSSNMKANNLCKAF 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02098 470 FunFam Serine/threonine-protein kinase PEPKR2 103 425 - -
Vivi3g02098 470 SMART serkin_6 112 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g02098 470 SUPERFAMILY Protein kinase-like (PK-like) 103 372 IPR011009 -
Vivi3g02098 470 Gene3D Transferase(Phosphotransferase) domain 1 103 387 - -
Vivi3g02098 470 ProSiteProfiles Protein kinase domain profile. 112 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g02098 470 CDD STKc_CAMK 111 359 - -
Vivi3g02098 470 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Vivi3g02098 470 PANTHER SERINE/THREONINE-PROTEIN KINASE 99 389 - -
Vivi3g02098 470 Pfam Protein kinase domain 112 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g02098 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02098 Vivi-Chr3 34556527 34562453 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02098 104 360 EF-hand Containing Proteins AT4G35310 44.944 4.89e-79 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vivi3g02098 Pkinase 8.1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02098 - - gmx:100812729 781.941