Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02073 ATGTACAACTCTATCAACATGTCCGACCAGATCAAGAACAACGAAGACACTGAAAATCACATCCATTACGATTCACACACCCTCGAAGACGGTTCCGGCGACGGAGAAGGACAAATCCAAGATGTTTCCCTCGAAGACGTTTATGCTTCCGGTGATGGAAACCATGCTGACATGTCAATTCAACGATTCGATGATTCTAGCCAGCTCACGCTCTCGTTCCGTGGTCAAGTGTATGTCTTCGATTCTGTTACCCCTGAAAAGGTTCAATCGGTTTTGTTACTGTTAGGAGGATGTGAACTATCTTCCGGTTCCCAATGTTTGGACACATCGCCCCTAAATCAGAGAACTGGTACTGAATTTCCAACAAGGTGTAGTCAACCACAGCGAGCAGCGTCTTTGATTAGGTTTCGTCAGAAAAGGAAAGAGCGAAACTTTGATAAGAAAGTTAGATATGAAGTGCGTCAAGAAGTTGCACTAAGGATGCAACGTAGTAAGGGCCAATTTACATCAGCTAAGAAACAAGATGGATCTAATAACTGGGGATCTGATCCAGAGTCCGGCCAAGATGTGGTTCAATCAGAAACTGCATGCACACACTGTGGAATCAGTTCAAGATCCACCCCTATGATGCGAAGGGGGCCATCTGGCCCAAGGACACTTTGCAATGCTTGTGGGCTTTTTTGGGCAAATAGAGGTACTTTGAGGGATCTATCTACTTCTAGGAGAAACCACGAACAGCACGCTCTTCCACCACCCGAGCAGAGTAATTTGAGGGACCTTTCTAATTCTAAGAGAAACCACGAACCCCACCCTCTCCCACCACCTGAGCAGGTCAGCGAGGTTAATGACTTGAACTGTGAGACTGCCCTTCCTGCGCATAATGATTCTGTTGATGATAAAACAGCTTTGACATCCGATCAATGA 924 0.4589 MYNSINMSDQIKNNEDTENHIHYDSHTLEDGSGDGEGQIQDVSLEDVYASGDGNHADMSIQRFDDSSQLTLSFRGQVYVFDSVTPEKVQSVLLLLGGCELSSGSQCLDTSPLNQRTGTEFPTRCSQPQRAASLIRFRQKRKERNFDKKVRYEVRQEVALRMQRSKGQFTSAKKQDGSNNWGSDPESGQDVVQSETACTHCGISSRSTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSTSRRNHEQHALPPPEQSNLRDLSNSKRNHEPHPLPPPEQVSEVNDLNCETALPAHNDSVDDKTALTSDQ 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02073 307 Pfam tify domain 66 96 IPR010399 -
Vivi3g02073 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 250 - -
Vivi3g02073 307 Gene3D - 188 248 IPR013088 GO:0006355|GO:0008270
Vivi3g02073 307 MobiDBLite consensus disorder prediction 238 282 - -
Vivi3g02073 307 ProSiteProfiles Tify domain profile. 62 97 IPR010399 -
Vivi3g02073 307 CDD ZnF_GATA 196 238 IPR000679 GO:0006355|GO:0043565
Vivi3g02073 307 Pfam GATA zinc finger 197 233 IPR000679 GO:0006355|GO:0043565
Vivi3g02073 307 PANTHER GATA TRANSCRIPTION FACTOR 28 13 294 IPR045280 GO:0006355
Vivi3g02073 307 SMART GATA_3 191 244 IPR000679 GO:0006355|GO:0043565
Vivi3g02073 307 ProSiteProfiles CCT domain profile. 129 171 IPR010402 GO:0005515
Vivi3g02073 307 MobiDBLite consensus disorder prediction 164 190 - -
Vivi3g02073 307 ProSitePatterns GATA-type zinc finger domain. 197 224 IPR000679 GO:0006355|GO:0043565
Vivi3g02073 307 ProSiteProfiles GATA-type zinc finger domain profile. 191 247 IPR000679 GO:0006355|GO:0043565
Vivi3g02073 307 Pfam CCT motif 129 171 IPR010402 GO:0005515
Vivi3g02073 307 SMART tify_2 62 97 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02073 Vivi-Chr3 34218222 34223027 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02073 66 305 Tify Gene Family AT4G24470 54.132 2.77e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi3g02073 CCT 9.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02073 - - lja:Lj0g3v0164269.1 345.895