LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g02071	ATGGCGGAACAACCTCTCCCGTTCGAGGATCATGCAATTCCGGCGGCTGACGACGACGAGGACTACACTGGCGGCGATGATACCATGGATGAATTGGATGAGGAGACGCATGTCAATTCAGTGAACGCTTCAGCTACTGCGAATCACAACGACGTCGTTTTGCCTATGACTCGTACTGGTGAGCTCACTCTTTCTTTCGAGGGTGAGGTTTACGTCTTTCCCGCTGTCACACCTCAGAAGGTTCAAGCTGTTTTGCTGCTTTTGGGAGGACGCGATACGCCGGCAGGCATGCCTACTGATGAACTTCCATTTGATCAAACTTATAGGGGCATGAGTGATATTACAAGGCGTCCGAATCTTTCACGAAGAATAGCCTCCTTGGTTAGGTTTCGTGAAAAACGCAAGGAAAGATGTTTTGACAAGAAAATTAGATACACCGTGAGAAAAGAGGTTGCAGAAAGGATGCATCGAGAGAAGGGACAGTTTGCATCCGTGAAGCCAAGCCCTGGTTCCTCTAATTGGTATTCTGCACAGGGTGCTGGTCAAGATGGCACTCCTAATCCTGAAACTCTGCGTAGATGTAAACATTGCGGAGTCAATGAAAATAATACTCCTGCAATGCGTCGTGGACCAGATGGACCAAGAACTTTATGTAATGCATGCGGGCTCATGTGGGCCAACAAGGGGACACTTAGAGATCTCAGTAAGGGTGGAAGAAGTCTTTCTATTGCACAAAGTGGTCTGGATCGTCCTATTGATGTCAAACCTACTGTTCTTGAAGGGGAAATGTCTGTCATCAGAAATGAACAAGGTATTTCTGAAGATCATCCTTCCAAGGCCGTTGCTGCTGAAGGTTTGAATAATGATGCATTTAATCCAAGTGATGAGGAATTACCTGTATCTGGAGAACACTTAGCAAGCACACTGCCGTCGGTGATTGATCATTCTTCGGAAAATGATGATGAGCAGGAACCCCTGGTTGAGCTTTCTAATCCTTCAGATACAGGAATGTCTAATCCTTCTGATACAGACATTGACATTCCTGGAAACTTTGATTAG	1059	0.4608	MAEQPLPFEDHAIPAADDDEDYTGGDDTMDELDEETHVNSVNASATANHNDVVLPMTRTGELTLSFEGEVYVFPAVTPQKVQAVLLLLGGRDTPAGMPTDELPFDQTYRGMSDITRRPNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAERMHREKGQFASVKPSPGSSNWYSAQGAGQDGTPNPETLRRCKHCGVNENNTPAMRRGPDGPRTLCNACGLMWANKGTLRDLSKGGRSLSIAQSGLDRPIDVKPTVLEGEMSVIRNEQGISEDHPSKAVAAEGLNNDAFNPSDEELPVSGEHLASTLPSVIDHSSENDDEQEPLVELSNPSDTGMSNPSDTDIDIPGNFD	352

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g02071	352	SMART	GATA_3	188	241	IPR000679	GO:0006355\|GO:0043565
	Vivi3g02071	352	MobiDBLite	consensus disorder prediction	328	345	-	-
	Vivi3g02071	352	ProSiteProfiles	CCT domain profile.	123	165	IPR010402	GO:0005515
	Vivi3g02071	352	MobiDBLite	consensus disorder prediction	159	188	-	-
	Vivi3g02071	352	ProSiteProfiles	Tify domain profile.	55	90	IPR010399	-
	Vivi3g02071	352	Pfam	GATA zinc finger	194	230	IPR000679	GO:0006355\|GO:0043565
	Vivi3g02071	352	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	187	239	-	-
	Vivi3g02071	352	Gene3D	-	187	257	IPR013088	GO:0006355\|GO:0008270
	Vivi3g02071	352	PANTHER	GATA TRANSCRIPTION FACTOR 28	17	338	IPR045280	GO:0006355
	Vivi3g02071	352	MobiDBLite	consensus disorder prediction	14	30	-	-
	Vivi3g02071	352	CDD	ZnF_GATA	193	240	IPR000679	GO:0006355\|GO:0043565
	Vivi3g02071	352	ProSitePatterns	GATA-type zinc finger domain.	194	221	IPR000679	GO:0006355\|GO:0043565
	Vivi3g02071	352	MobiDBLite	consensus disorder prediction	287	352	-	-
	Vivi3g02071	352	SMART	tify_2	55	90	IPR010399	-
	Vivi3g02071	352	ProSiteProfiles	GATA-type zinc finger domain profile.	188	246	IPR000679	GO:0006355\|GO:0043565
	Vivi3g02071	352	MobiDBLite	consensus disorder prediction	165	185	-	-
	Vivi3g02071	352	Pfam	tify domain	61	89	IPR010399	-
	Vivi3g02071	352	MobiDBLite	consensus disorder prediction	1	30	-	-
	Vivi3g02071	352	Pfam	CCT motif	123	165	IPR010402	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g02071	Vivi-Chr3	34190457	34197415	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g02071	6	236	Tify Gene Family	AT1G51600	48.980	2.51e-64	204

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Vivi3g02071		CCT	3.2e-15	CL0281

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g02071	-		-	gmx:100801328	470.314