Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02052 ATGAACTTGTGCTTCAAGTCTTCAATTTCAACAATGGTGTACCCGTGTTCAATGCAATTTTCTTGTGATGTTAGGCTCAAAACTAATAATAATGGACCTAGTAGTTTTCAGCATCATAATTTGGCGCGGGTTCGTCGATTACATTTGGTCACCATGAATCTTTTACCGCGTACTTTGAAACGAGATTCTTTGGGACTTCATTTGTTGAGTAGAGTTCATGCGCCTGTAAGAAAGACTCCTTCCAGGTGCAGTGTTTTTGTATGTCGGTCTGCCATGCTACCAGGTGGAGGGAGTGGGACTGCCCTCGTGAAATCTGCTAGCGTTATTTTAACAAGGTCATATGATTCTTTACTGGGAAGCCCTATTTTACTTAGATTGATCCCAGCCCTTGGTATTATTGCCTTTGCTGTTTATGGTATAGAGCCACTCCTTCGTCTCAGCAGGATTCTATTTCTTCAAAGGACTGACAGTAGTTGGAAGAAAAGTAGTTCGCGATATGTTATGACATCATATTTTCAGCCATTATTGTTGTGGACTGGGGCAATGCTAATATGCAGGGCATTAGATCCAATTGTCCTGCCATCTCCAAATAGCCAAGTTGTGAAGCAACGCCTGCTTAATTTTGTGAGATCTTTGTCAACAGTGATTTCATTTGCATACTGTTTATCAAGCTTAATTCAACAAGCTCAAAAATTCTTTTTGGAGGCAAATGAATCTAGTGATGCAAGAAATATGGGCCTTGATTTTGCTGGGAAAGCAATATACACTGCTGTATGGGTTGCTGCTGTGTCATTGTTCATGGAATTGCTAGGTTTCTCCACGCAGAAGTGGTTAACTGCTGGTGGTTTGGGCACAGTATTGCTCACTCTTGCTGGTCGGGAGATATTTACGAACTTCCTATCAAGTATAATGATCCATGCAACTCGGCCATTCATATTGAATGAGTGGATTCAAACAAAGATTGAAGGATACGAGGTTTCTGGCACTGTTGAGCATGTGGGTTGGTGGTCACCAACCATTATTAGAGGTGATGATCGTGAAGCAGTTCATATTCCCAATCACAAGTTCACTGTCAATGTTGTGAGAAATCTGACTCAGAAATCTCATTGGCGTATCAAGAGTTACATTTCTATCAGTCACTTGGATGTTAACAAAATTAACAGTATTGTAGCAGATATGCGCAAGGTTTTGGCTAAAAACCCTCAAGTGGAGCAGCAGAGATTGCACAGAAGGGTATTTTTGGAAGACGTCAATCCTGAAAATCAAGCTCTAAAGATATTGATATCTTGCTTTGTGAAGACTTCACATTTTGAGGAGTACCTCTGTGTTAAGGAGGCAATCCTTTTGGATCTTCTTAGAGTTGTCAGTCATCATCGAGCTCGGTTAGCCACTCCCATCCGCACAGTTCAGAAGATATACAGTGAGCCCGTCTCAGAAAATATTCCCTTTGGCGATGGCATTTTTACTCGATCCAGAGCCCCAGTAAATCGCCCATTCCTACTGATAGAACCACCATATAAAGTTAATGGTGAAGATAAAGTTAAGCCGTCAACTCGATCAACTCGGGGCAATGAGGAAAAAGATGCTAAGATAGAGGAACCAGTGGCATCTGACTCCAAAAGTGATGAGAACTTTGCAGGAACATCAACCTCTACACTTGGTTTGAACTCCAAGGATAAGTCCAAGTCAAATTCTGATGCTCAAATCCAGAATACAGGTTCCGACAGCTCAGTGGAGAAGACCACCAAAACCATGCAGCCTAAAAAAGAAAGTGCTGGAGATGTAGGAAAGGGAAATACAATTCCTGTATCTAAAAACCTTGCACAAAGTACTGTATCTGAAACTTCTCCTGTTACTTCCCCGGAGTCTAGCAGGGAAGAGACTTCTTCTGCTAATGACGATAAATCTTCTGTGTCATCATCACCAGTTAGGCCTCCCTTAGAAGAGAATATTCTTCTTGGGGTTGCACTTGAAGGCTCAAAACGAACCCTTCCAATAGAGGAAGAAGTTAGTCCATCTCCTAACTCGGCCGAGTCACAGGAATTTGCTGTTCAACGGAATGGAAATGGAAATGGACCTCCTACTAACAAAGATAAGAAGGATGGTCCAATATCTTGA 2118 0.4183 MNLCFKSSISTMVYPCSMQFSCDVRLKTNNNGPSSFQHHNLARVRRLHLVTMNLLPRTLKRDSLGLHLLSRVHAPVRKTPSRCSVFVCRSAMLPGGGSGTALVKSASVILTRSYDSLLGSPILLRLIPALGIIAFAVYGIEPLLRLSRILFLQRTDSSWKKSSSRYVMTSYFQPLLLWTGAMLICRALDPIVLPSPNSQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFLEANESSDARNMGLDFAGKAIYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFILNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLTQKSHWRIKSYISISHLDVNKINSIVADMRKVLAKNPQVEQQRLHRRVFLEDVNPENQALKILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSEPVSENIPFGDGIFTRSRAPVNRPFLLIEPPYKVNGEDKVKPSTRSTRGNEEKDAKIEEPVASDSKSDENFAGTSTSTLGLNSKDKSKSNSDAQIQNTGSDSSVEKTTKTMQPKKESAGDVGKGNTIPVSKNLAQSTVSETSPVTSPESSREETSSANDDKSSVSSSPVRPPLEENILLGVALEGSKRTLPIEEEVSPSPNSAESQEFAVQRNGNGNGPPTNKDKKDGPIS 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02052 705 SUPERFAMILY Sm-like ribonucleoproteins 295 365 IPR010920 -
Vivi3g02052 705 MobiDBLite consensus disorder prediction 669 694 - -
Vivi3g02052 705 MobiDBLite consensus disorder prediction 541 581 - -
Vivi3g02052 705 MobiDBLite consensus disorder prediction 508 539 - -
Vivi3g02052 705 MobiDBLite consensus disorder prediction 508 705 - -
Vivi3g02052 705 Gene3D - 207 309 - -
Vivi3g02052 705 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 15 702 IPR045042 -
Vivi3g02052 705 MobiDBLite consensus disorder prediction 602 626 - -
Vivi3g02052 705 Pfam Mechanosensitive ion channel 252 459 IPR006685 GO:0016020|GO:0055085
Vivi3g02052 705 Gene3D - 311 366 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02052 Vivi-Chr3 33851789 33858734 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02052 38 684 Mechanosensitive Ion Channel Family AT1G58200 56.449 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02052 K22047 - gmx:100777815 1018.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02052 3 33851789 33858734 Vivi3g02052 3 33851789 33858734 ECH