Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02050 ATGTTGCATGACCTTATACTTCAGTTCAATCCAACAATGGCGTATTCAGGATCAATTCGATTGTCTTGTGATGTTAAGCAATACATGAGTATTAATGGAAGATGTAGTTTTTGTCATAAACCGAATCCCGGTAATCGATTATGTTTTGTTGCCTTTGATCGTTTGCGCTGTGGTTTGAGAATAGAGTCTTCACCGCGCATCTCTTCCGGATTATATAGTCAAATTAAGCATATACCGTCTAGTTGTAATGTTTTCTTGTGCCGATCTGCTCTTGTACCGTTTGGAGGGTGTGAGGCTCCGCTGATAAAAGTGGCTGCTGTTTCTTTGTCAAGGTCATGTAATGCTATATCAGGAAGACCGGTTGTGCTTCAATTGATCCCTGCCCTTGGTATCATTGGCTTTGCTGTCTTTGGTCTTGAACCTCTCCTGCGCTTTTGCGGATCTCTATTTCTCCAAGAATGGACTGATAGAAGTTGGAAGAAAAGCAATTCATGTTATATAATGACATCTTACTTCCAACCTTTGCTGCTTTGGACTGCCGTAATGCTCATCTGCAGGAGTTTAGATCCACTAGTTCAGCAATCAAAAACCAGTTCAGTTATAAAGCAACGGCTGCCGAGTTTTGTCAGATCTTTTTCAACTGTGTTTACATTTGCTTACTGTTCTTCAAGCTTTGTTCGGCAAGCACAAAAGCTGTGTATGGAGACAAATGGCTCCAGTGTTGAAAGAAATATGAGCATTGATCTTATTGGGAAAGCTGTATATACCGCAATATGGGTTGCTGCCGTGTCATTGTTCATGGAGATGCTGGGTCTCTCCACCCAGAAGTGGTTGACTGCTGGTGGAATGGGTACAGTGTTGCTTTCGATTGCGGGGCGTGAGATATTCATGAACTTCCTTTCAAGTTTGATGATTCATGCAACTCGGCCATTTGTTGTGAATGAGCGGATTAAAACAAAGATAAAAGGATATGAGGTTTCTGGTAGAGTTGAGCATGTAGGCTGGTGGTCACCAACAGTAGTTAGAGGTGCTGATTGTGAAGCAGTTCACATTCCTAATCACAAGTTGAGTGTAAATGTTGTAAGGAATCTTAGTAAGAAAACTCACTGGCGCATCAAAACTCACCTTGCTGTCAGTCACTTGGATGTTAATAATATTAACAGCATCATAGCTGATATGCGCAAGGTTTTGGCCAAAAATCCTCTAGTAGAGCAAAGAAAATTGCACAGAAGGGTTTTTCTGGAGGATGTCAATCCAGAAAATCAAGCTCTCATGATACTGATATCTTGCTTTGTTAAAACTTCACATTCTGAAGAATACCTCCGTGTTAAGGAGGCCATTCTCTTGGATCTTCTTAGAGTCATCAGCCATCATGGAGCTCGGCTAGCCACACCCATTCGCACAATTCAGAAGTTGTACAGTGATTATGATTTAGAAATTGATCCATTTGACAGCCCCATTTTCACTCCTTCTAGAGCAAAGGGAAACCACTCTGTCCCATTCATAGACGAAGGTGAAAAAATTGCAGCGACATGGACTCCCTCTTCCAGTGTAAAGTCGCAGGATAAATTAAAGTCACCATCTCAAGCCAAGCCACAGAATGTCAGTTCTGATAATTCTGTTCAGAAGGCCTCTAAATCAAGAACAGCACCCCAAATTTTATCATCATCCAATGGAACTTCACCCTCAAAGAAAGATAAAGAAAAATGA 1710 0.4135 MLHDLILQFNPTMAYSGSIRLSCDVKQYMSINGRCSFCHKPNPGNRLCFVAFDRLRCGLRIESSPRISSGLYSQIKHIPSSCNVFLCRSALVPFGGCEAPLIKVAAVSLSRSCNAISGRPVVLQLIPALGIIGFAVFGLEPLLRFCGSLFLQEWTDRSWKKSNSCYIMTSYFQPLLLWTAVMLICRSLDPLVQQSKTSSVIKQRLPSFVRSFSTVFTFAYCSSSFVRQAQKLCMETNGSSVERNMSIDLIGKAVYTAIWVAAVSLFMEMLGLSTQKWLTAGGMGTVLLSIAGREIFMNFLSSLMIHATRPFVVNERIKTKIKGYEVSGRVEHVGWWSPTVVRGADCEAVHIPNHKLSVNVVRNLSKKTHWRIKTHLAVSHLDVNNINSIIADMRKVLAKNPLVEQRKLHRRVFLEDVNPENQALMILISCFVKTSHSEEYLRVKEAILLDLLRVISHHGARLATPIRTIQKLYSDYDLEIDPFDSPIFTPSRAKGNHSVPFIDEGEKIAATWTPSSSVKSQDKLKSPSQAKPQNVSSDNSVQKASKSRTAPQILSSSNGTSPSKKDKEK 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02050 569 Gene3D - 211 309 - -
Vivi3g02050 569 SUPERFAMILY Sm-like ribonucleoproteins 295 365 IPR010920 -
Vivi3g02050 569 MobiDBLite consensus disorder prediction 512 569 - -
Vivi3g02050 569 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 63 563 IPR045042 -
Vivi3g02050 569 Gene3D - 310 363 IPR023408 -
Vivi3g02050 569 MobiDBLite consensus disorder prediction 512 561 - -
Vivi3g02050 569 Pfam Mechanosensitive ion channel 252 461 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02050 Vivi-Chr3 33829064 33834919 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02050 71 569 Mechanosensitive Ion Channel Family AT1G58200 55.248 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02050 K22047 - mtr:11434686 930.243