Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02049 ATGAAATTATATTTATTTTACCGTTTACAGATTAAAACTTCATCCCTGTCTGTTATTCATCCAACAACCCAAAAAATGAACACAAACAAAGCAGAAGCTGAACGGTTACTCGAAATCGGCGAAGAGCTTCTACAGAAACGCGATCTGAAAGGCTCACGAGAATTAGCCATTCTGGTCCAAGAAACCGAGCCTCTTCTAGAAGGTTCCGACCAGATCCTAGCAATCGTCGATGTTCTAGAAGCAGCCGAAAAGCCTCTGAACCTCAACACCCACCACCTGGATTGGTACGCGATTCTTCAAATCGATCGGAACTCGCGAGACTCGCGAGATCCGAGTTTCATAAGGAAACAGTACCGAACTCTGGCTCTTCTTCTTCAGCCTGATAAGAATCCGTTTTCGTTTGCTGAGTTGGCTTTCAAGCTTGTTTCTGATGCTTGGGCCGTTTTGTCTGACCCGGCCCAAAAGGCCCAATATGATAGGGGGTTTGAAGTGGAGGGGAATGGGTTGGGTAGTTTTTGGACTGCTTGTCCTTATTGTTACTGTTTGTATGAGTATGCTAGGGTCTATGAGGGGTGTTGTTTGATGTGTCAGAAGTGTGATAAGTCGTTTTGTGGTGTTGAGATTCCGAATCTTCCGGAGTTTGTTCCCGGGGAAGAGGCTTATTATGTTACTTGGGGGATGTTTCCGATGGGGTTTGTGTTTGAGAGATTGGAAAATGGTGATGGTGGTGATTCTGCTAAGAGAAATTGA 750 0.4493 MKLYLFYRLQIKTSSLSVIHPTTQKMNTNKAEAERLLEIGEELLQKRDLKGSRELAILVQETEPLLEGSDQILAIVDVLEAAEKPLNLNTHHLDWYAILQIDRNSRDSRDPSFIRKQYRTLALLLQPDKNPFSFAELAFKLVSDAWAVLSDPAQKAQYDRGFEVEGNGLGSFWTACPYCYCLYEYARVYEGCCLMCQKCDKSFCGVEIPNLPEFVPGEEAYYVTWGMFPMGFVFERLENGDGGDSAKRN 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02049 249 Gene3D DnaJ domain 80 168 IPR036869 -
Vivi3g02049 249 Pfam DnaJ domain 94 159 IPR001623 -
Vivi3g02049 249 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 26 237 - -
Vivi3g02049 249 ProSitePatterns Nt-dnaJ domain signature. 139 158 IPR018253 -
Vivi3g02049 249 SMART dnaj_3 93 154 IPR001623 -
Vivi3g02049 249 CDD DnaJ 94 151 IPR001623 -
Vivi3g02049 249 SUPERFAMILY Chaperone J-domain 90 162 IPR036869 -
Vivi3g02049 249 ProSiteProfiles dnaJ domain profile. 94 162 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02049 Vivi-Chr3 33827451 33828442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02049 16 249 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 48.819 5.73e-78 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02049 - - tpra:123915791 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02049 3 33827451 33828442 Vivi3g02049 3 33827451 33828442 ECH
Vivi7g01314 7 67521345 67523285 Vivi3g02049 3 33827451 33828442 PCT