Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02045 ATGGAAGAGGATAGAAGGAATGCTGATGATCCTTACAACTCAAACTGTGCAAGAAGCTCTGGTCAACCATCAACTGCAAGTATAATGACTGAAACTACCGCACCTAATTTTGTATACAGGAGAAAAAAGCTACGGAAGGGATCAACTGCTCCTCTTTTCAAGCTTGGGCCAACTGATGTGCAGACAATTGCCAATATCCCTTCAGTCATAAGTTCCTCTTTGCATTTATCATCAGCTGAGGATCAAACAACTGATTTTGTAGTTGAGCATCAAATTGAAATGGTTAAAGAACCTACTGTGCCTTCTGTCTTACTTGAAGAAGCAGCCAAAGATATCATACAGAAAAAATTAGGTATTGGCAGTGTAAATGATAGTTGTTCCTCTTCAAAGTCAAATATGGCACTTGTTTCAGATTCCTTAGATACTGAGATGGATAACACTGGCGAATGCTCTTCCTCCGGTGTAATAGGAATGGATGCTGCAAGTGAAGATTTAACAGAAAAGGAGTTCTGTGTTAATATTTTAAGAAGCCACGGACTTCTTAAAGGAGATACTCTTACATGCAATGTGGTTTCTGTTGAAGGTGCTGTTACCATTGGTAATAACTACTGTTCCAGGTCATGCAAAATATGTGGTCATTTGGACAGTTCAGGGAAAATGCTTTTATGTGATCATTGTGAAGATTCATATCATCCATATTGCTACAATTCACGTTTCAAAAAATTACCAATTGATGAGTGGTTTTGTCATTCGTGTCTTAGTAAAAGGCAGAAAATTCTTAAGGAGACAATTAACAAATCACCAGGCATCAATAGTGAAATGAGGAAATATAGAACTGCCAAGGGTGAAATGAATCCCATACTGTTGATGTTGAGAGACACTGAGCCATATGCAAGTGGCGTGCGAGTTGGTAAAGGTTTTCAAGCTGCAGTACCTGACTGGTCAAACCCTGTAAAAAGTGATGAAGACGACTTTCCAGAACCATTGGAAATTAATCCTTCCGAGTCTTATGGAACGCAGGAAGAAAATATGAGAAATCCAATTAAAGTCACCATTGGCAATTGGCTTCAATGCCAGGAGGTTATAGATAAAACTAGCGAAACAATATGTGGCAAATGGCGCAGGGCTCCACTATTTGAAGTTCAAACCAATGGCTGGGAGTGCTTCTGTGCTATTCATTGGGATCCATCTCATGCTGATTGTTCTGTACCTCAGGAGGTGGAGACAGATGAAATTCAAAAGCAACTGAAGTATATAGAAATGCTGAGACCGCGACTTGCTGCTAGACAGAGAAAATCAGATTGCACAAATAAAGGTGATTGA 1323 0.3953 MEEDRRNADDPYNSNCARSSGQPSTASIMTETTAPNFVYRRKKLRKGSTAPLFKLGPTDVQTIANIPSVISSSLHLSSAEDQTTDFVVEHQIEMVKEPTVPSVLLEEAAKDIIQKKLGIGSVNDSCSSSKSNMALVSDSLDTEMDNTGECSSSGVIGMDAASEDLTEKEFCVNILRSHGLLKGDTLTCNVVSVEGAVTIGNNYCSRSCKICGHLDSSGKMLLCDHCEDSYHPYCYNSRFKKLPIDEWFCHSCLSKRQKILKETINKSPGINSEMRKYRTAKGEMNPILLMLRDTEPYASGVRVGKGFQAAVPDWSNPVKSDEDDFPEPLEINPSESYGTQEENMRNPIKVTIGNWLQCQEVIDKTSETICGKWRRAPLFEVQTNGWECFCAIHWDPSHADCSVPQEVETDEIQKQLKYIEMLRPRLAARQRKSDCTNKGD 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02045 440 Gene3D - 353 418 - -
Vivi3g02045 440 Pfam PHD-finger 208 254 IPR019787 -
Vivi3g02045 440 SUPERFAMILY FYVE/PHD zinc finger 206 259 IPR011011 -
Vivi3g02045 440 MobiDBLite consensus disorder prediction 1 29 - -
Vivi3g02045 440 FunFam uncharacterized protein LOC106759733 isoform X4 353 418 - -
Vivi3g02045 440 ProSiteProfiles Zinc finger PHD-type profile. 205 255 IPR019787 -
Vivi3g02045 440 ProSiteProfiles Zinc finger CW-type profile. 349 409 IPR011124 GO:0008270
Vivi3g02045 440 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 196 273 IPR047171 GO:0006338
Vivi3g02045 440 MobiDBLite consensus disorder prediction 12 29 - -
Vivi3g02045 440 Pfam ELM2 domain 301 414 IPR000949 -
Vivi3g02045 440 ProSitePatterns Zinc finger PHD-type signature. 208 252 IPR019786 -
Vivi3g02045 440 SMART PHD_3 207 253 IPR001965 -
Vivi3g02045 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 279 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02045 Vivi-Chr3 33785546 33801594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02045 208 284 C2H2 Transcription Factor Family AT3G01460 32.468 1.07e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi3g02045 ELM2 5.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02045 - - mtr:11430602 689.878