Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02044 ATGTTAATACAAAGTTCTCTTAGTTCAGTTGAAGCTGGTCTATGTAATGTATATAATGATGGGAAAGATTTTCAATGTGACGGGATACCTAGTGGTGAAACTTGGCAGGTTTGTCTGAAATGCAACAAGTACCCTATTGACTGGTGTAAAAAAGCTAAACCAATGGAAGAGGATAGAAGGAATGCTGATGATCCTTACAACTCAAACTGTGCAAGAAGCTCTGGTCAACCATCAACTGCAAGTATAATGACTGAAACTACCGCACCTAATTTTGTATACAGGAGAAAAAAGCTACGGAAGGGATCAACTGCTCCTCTTTTCAAGCTTGGGCCAACTGATGTGCAGACAATTGCCAATATCCCTTCAGTCATAAGTTCCTCTTTGCATTTATCATCAGCTGAGGATCAAACAACTGATTTTGTAGTTGAGCATCAAATTGAAATGGTTAAAGAACCTACTGTGCCTTCTGTCTTACTTGAAGAAGCAGCCAAAGATATCATACAGAAAAAATTAGGTATTGGCAGTGTAAATGATAGTTGTTCCTCTTCAAAGTCAAATATGGCACTTGTTTCAGATTCCTTAGATACTGAGATGGATAACACTGGCGAATGCTCTTCCTCCGGTGTAATAGGAATGGATGCTGCAAGTGAAGATTTAACAGAAAAGGAGTTCTGTGTTAATATTTTAAGAAGCCACGGACTTCTTAAAGGAGATACTCTTACATGCAATGTGGTTTCTGTTGAAGGTGCTGTTACCATTGGTAATAACTACTGTTCCAGGTCATGCAAAATATGTGGTCATTTGGACAGTTCAGGGAAAATGCTTTTATGTGATCATTGTGAAGATTCATATCATCCATATTGCTACAATTCACGTTTCAAAAAATTACCAATTGATGAGTGGTTTTGTCATTCGTGTCTTAGTAAAAGGCAGAAAATTCTTAAGGAGACAATTAACAAATCACCAGGCATCAATAGTGAAATGAGGAAATATAGAACTGCCAAGGGTGAAATGAATCCCATACTGTTGATGTTGAGAGACACTGAGCCATATGCAAGTGGCGTGCGAGTTGGTAAAGGTTTTCAAGCTGCAGTACCTGACTGGTCAAACCCTGTAAAAAGTGATGAAGACGACTTTCCAGAACCATTGGAAATTAATCCTTCCGAGTCTTATGGAACGCAGGAAGAAAATATGAGAAATCCAATTAAAGTCACCATTGGCAATTGGCTTCAATGCCAGGAGGTTATAGATAAAACTAGCGAAACAATATGTGGCAAATGGCGCAGGGCTCCACTATTTGAAGTTCAAACCAATGGCTGGGAGTGCTTCTGTGCTATTCATTGGGATCCATCTCATGCTGATTGTTCTGTACCTCAGGAGGTGGAGACAGATGAAATTCAAAAGCAACTGAAGTATATAGAAATGCTGAGACCGCGACTTGCTGCTAGACAGAGAAAATCAGATTGCACAAATAAAGGTGATTGA 1485 0.3919 MLIQSSLSSVEAGLCNVYNDGKDFQCDGIPSGETWQVCLKCNKYPIDWCKKAKPMEEDRRNADDPYNSNCARSSGQPSTASIMTETTAPNFVYRRKKLRKGSTAPLFKLGPTDVQTIANIPSVISSSLHLSSAEDQTTDFVVEHQIEMVKEPTVPSVLLEEAAKDIIQKKLGIGSVNDSCSSSKSNMALVSDSLDTEMDNTGECSSSGVIGMDAASEDLTEKEFCVNILRSHGLLKGDTLTCNVVSVEGAVTIGNNYCSRSCKICGHLDSSGKMLLCDHCEDSYHPYCYNSRFKKLPIDEWFCHSCLSKRQKILKETINKSPGINSEMRKYRTAKGEMNPILLMLRDTEPYASGVRVGKGFQAAVPDWSNPVKSDEDDFPEPLEINPSESYGTQEENMRNPIKVTIGNWLQCQEVIDKTSETICGKWRRAPLFEVQTNGWECFCAIHWDPSHADCSVPQEVETDEIQKQLKYIEMLRPRLAARQRKSDCTNKGD 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02044 494 Gene3D - 407 472 - -
Vivi3g02044 494 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 333 IPR013083 -
Vivi3g02044 494 Pfam PHD-finger 262 308 IPR019787 -
Vivi3g02044 494 SMART PHD_3 261 307 IPR001965 -
Vivi3g02044 494 ProSiteProfiles Zinc finger PHD-type profile. 259 309 IPR019787 -
Vivi3g02044 494 FunFam uncharacterized protein LOC106759733 isoform X4 407 472 - -
Vivi3g02044 494 ProSiteProfiles Zinc finger CW-type profile. 403 463 IPR011124 GO:0008270
Vivi3g02044 494 MobiDBLite consensus disorder prediction 58 81 - -
Vivi3g02044 494 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 250 327 IPR047171 GO:0006338
Vivi3g02044 494 Pfam ELM2 domain 355 468 IPR000949 -
Vivi3g02044 494 MobiDBLite consensus disorder prediction 66 81 - -
Vivi3g02044 494 SUPERFAMILY FYVE/PHD zinc finger 260 313 IPR011011 -
Vivi3g02044 494 ProSitePatterns Zinc finger PHD-type signature. 262 306 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02044 Vivi-Chr3 33785492 33801594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02044 262 338 C2H2 Transcription Factor Family AT3G01460 32.468 2.09e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi3g02044 ELM2 6.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02044 - - mtr:11430602 780.015