Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02040 ATGGTGACAAACAACCACCGCCACCACATGGCTTCTTCACCTTCATTCTTCAAAACTCTCACTCTATTATTATTACTATCGCAACACTTTTTAACCGTTGTTATTGCTTTCACACAGAACATCACAGATACCAGTCCACCTCCGTCTCCCGTTCCCGACGACGCCGCCACTACCAATTCTCAACCTCAACACAACGCCTACACGCGAATAAAACCAAGCGTGGCGATTCTCGTTTGCGTTTTCACCGTTCTTTTTTCTCTCACCTCTGTTCTGCTCCTCTATGTAAAACACGTCAATTATATTGCCTCCCCTGGCGAGATAGGTAGTGTCGAAAACGGCGGAGGTTCGTATTTTAACGGCGGGAGAAAAAACTCCGGGATAGACCGTTCGGTGGTTGAATCGTTACCGATTTTCAGATTCGGATCACTTACTGGTCAAAAGGATGGTTTAGATTGTGCGGTTTGTCTCTGTAAATTTGAATCCTCGCAAGTTTTACGGTTATTGCCGAAATGTAAACACGCTTTTCATGTGGAGTGTGTTGATACGTGGCTGGATGCACATTCAACTTGTCCTCTTTGCCGTTCTAGAATCGATCCTGAAGATGTTCTTCTCGTAGTGGAAGATAAAGATTCATCATCATCATCAACATCAGCAACGCCGTACCAGATTCACAACCAGAATCAGAAGGACGAAGAAAATGAAAATGAAAATGCTATGGAAATTGAAAGAGGAAGAATGTCAAGAAGCGAGATTTTGGAGATTTATCGAAAGAGGCATTCGTCGGTAGGGGAAAAGGAATGGGAACGAGAACGAGAACGAGAAAGGAAGAAAACGGCGTCGTTCAGATGGTCTCTGGATAGTTCTAGAAAGAAGAGCGAGAGTAGCATTGGGCTTGGGCTTGGTTGTTTTGCTGGGCCGAGAAAAGACGGGATGTTGTTAACGAAAGAAGAGAGTAGCGTGGAGCGGAGAAAGAGGTTGGAACATAGGATAATTGTGTCACCTTCCGTGAGGCTCCACCAGAATCAACGGTGGAGTGATGTGCAACCGTGTGATATGTTGTATCTAACTTCAGAGATGATGATAATGAGTGGTGGAGTAAAGAATGTGAATAGGAGGAATAATGAGAGTAGTTGGAGTGGCAGGGGAGTAATTAATTCGAGAAGTGTGTCTGAAATCACGGGGCTCAACAGGTTCCAAAGCAACAACACACAACAACACAGCAATAGTAGTAGTAATAATAATTGTTAG 1248 0.4407 MVTNNHRHHMASSPSFFKTLTLLLLLSQHFLTVVIAFTQNITDTSPPPSPVPDDAATTNSQPQHNAYTRIKPSVAILVCVFTVLFSLTSVLLLYVKHVNYIASPGEIGSVENGGGSYFNGGRKNSGIDRSVVESLPIFRFGSLTGQKDGLDCAVCLCKFESSQVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRSRIDPEDVLLVVEDKDSSSSSTSATPYQIHNQNQKDEENENENAMEIERGRMSRSEILEIYRKRHSSVGEKEWERERERERKKTASFRWSLDSSRKKSESSIGLGLGCFAGPRKDGMLLTKEESSVERRKRLEHRIIVSPSVRLHQNQRWSDVQPCDMLYLTSEMMIMSGGVKNVNRRNNESSWSGRGVINSRSVSEITGLNRFQSNNTQQHSNSSSNNNC 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02040 415 SUPERFAMILY RING/U-box 133 199 - -
Vivi3g02040 415 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Vivi3g02040 415 FunFam RING-H2 finger protein ATL43 127 201 - -
Vivi3g02040 415 Pfam Ring finger domain 151 194 IPR001841 -
Vivi3g02040 415 MobiDBLite consensus disorder prediction 208 243 - -
Vivi3g02040 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 201 IPR013083 -
Vivi3g02040 415 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 46 407 - -
Vivi3g02040 415 CDD RING-H2_EL5-like 151 194 - -
Vivi3g02040 415 MobiDBLite consensus disorder prediction 208 226 - -
Vivi3g02040 415 SMART ring_2 152 193 IPR001841 -
Vivi3g02040 415 MobiDBLite consensus disorder prediction 227 243 - -
Vivi3g02040 415 MobiDBLite consensus disorder prediction 44 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02040 Vivi-Chr3 33755523 33757388 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02040 63 397 C3H Transcription Factor Family AT5G05810 45.938 2.39e-75 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02040 K19041 - qsa:O6P43_022402 280.796