Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02015 ATGGAATTTGACGAACACGAAGAAGATCAAGAGGAGGAGGAGGAAGACGAAGAAGAAGAAATGGGGTTCCCGGTTACGCCGGTTGCAGGTTACGACTCGCTCGGAAACTCCGGCGTACGGTCCAAACTAAGCGGTGGTGTTATGGAAACCGATGGAGCAGCGGTTATCTCTACAGGCGGTGGTCTCAAAAGTGCGGCCAAAGGGACGGTGAGGTACAGAGAATGTCAAAAGAATCACGCCGTGAGTATCGGCGGTCACGCTGTTGACGGTTGTTGCGAGTTTTTAGCTGCAGGTGAAGAAGGAACACTGGAAGCCGTAATTTGCGCTGCTTGTAACTGTCACCGGAACTTTCACCGCAAAGAGATCGACGGCGAGGTCATTTCGCATAATCATCAACAACGGTCTCACTCTCACTCTCAGACTCAGTACCACCACCATCAGTTATCCCCTTACTACCACCGTGCAGCGCTGCCTCCTCCACCAGGATACCACCAATTATTAACTCCACCGCCGGTTTCACACCACCGCCCGTTAGCTCTTCCGCCTGTCGCATCTGGAGGCTTCAGCAGAGAAGACGACGATGTATCAATTCCAAGCAGCAGCGGCGGCGGAAGTGGAACGAAGAAAAGGTTTAGGACGAAGTTCACGCAGGAGCAGAAAGATAAGATGCTTGCATTTGCGGAGAGTATCGGATGGAGAATCCAGAAAGAAGACGAAGGTGCAATTGAACAATTCTGTGCTGAGAATTACATCAAGAGAAATGTGCTTAAGGTTTGGATGCACAATAACAAGCACACTCTTGGTAAGAAACCCTAA 816 0.5037 MEFDEHEEDQEEEEEDEEEEMGFPVTPVAGYDSLGNSGVRSKLSGGVMETDGAAVISTGGGLKSAAKGTVRYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGEVISHNHQQRSHSHSQTQYHHHQLSPYYHRAALPPPPGYHQLLTPPPVSHHRPLALPPVASGGFSREDDDVSIPSSSGGGSGTKKRFRTKFTQEQKDKMLAFAESIGWRIQKEDEGAIEQFCAENYIKRNVLKVWMHNNKHTLGKKP 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02015 271 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 72 121 IPR006456 -
Vivi3g02015 271 MobiDBLite consensus disorder prediction 1 31 - -
Vivi3g02015 271 FunFam Zinc-finger homeodomain protein 2 197 269 - -
Vivi3g02015 271 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 57 267 - -
Vivi3g02015 271 Coils Coil 1 21 - -
Vivi3g02015 271 Gene3D - 195 268 - -
Vivi3g02015 271 MobiDBLite consensus disorder prediction 1 22 - -
Vivi3g02015 271 NCBIfam homeobox domain, ZF-HD class 208 264 IPR006455 -
Vivi3g02015 271 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 71 122 IPR006456 -
Vivi3g02015 271 MobiDBLite consensus disorder prediction 185 210 - -
Vivi3g02015 271 Pfam ZF-HD protein dimerisation region 70 122 IPR006456 -
Vivi3g02015 271 SUPERFAMILY Homeodomain-like 199 269 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02015 Vivi-Chr3 33489297 33490604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02015 15 267 ZF-HD Transcription Factor Family AT4G24660 47.860 1.64e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vivi3g02015 ZF-HD_dimer 2.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02015 - - mtr:11435175 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02015 3 33489297 33490604 Vivi3g02015 3 33489297 33490604 ECH
Vivi7g01281 7 65648366 65649563 Vivi3g02015 3 33489297 33490604 PCT