Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02011 ATGGCACCTAGTTTTGATTGTGCTTCTAGCCTTCTTTGCACTGAGGATACTAGTGTTTTTGATGATGGTGAACATCAGGGGACTGTTGAGGTGTACGAGGATTCGTGGCGTCCGAGGTTCGATCATCGGAGGGGTCAAGGTGAGTCTGTTGGTGTTGCTGATGAGTTGCCATTACAGAGTGAGGAGTGTTTTGGGCTGATGTTGGAAAAGGAGTGTCAACAATGGGTTGGTGAGGATTACTTTGATAGGTTTCGGTTTGGGGATTTGGATTTTGGTGCTAGAAATGAAGCGATTGATTGGATTCTAAAGGTTGGTGCCCATTTCGGTTTTGGTCCTTTATGCGTTTATCTATCCATTAATTACATGGATCGGTTCCTTTCCGTGTATGAATTACCAAAGGGGCGAGTTTGGACAATGCAATTGTTGGCTATAGCTTGTTTATCTTTGGCGGCCAAATTAGAGGAAACTGATGTTCCTATGATTCTTGATTTGCAGATTGGTGAATCGAAGTTTCTATTTGAAGCTAAAACTATTCAGAGAATGGAGCTTCTTGTACTAAGCACATTGAAGTGGAGAATGCAATCAACTACTCCTTTCTCATTCATTGAATATTTCCTTACTAAGATTAATGATAGTGATAATAAGAGTTCATTAAGTTCTTCCATTTCGCAATCCACTAAACTCATATCGAACACCGTTAAAGGAATTGAATTCTTGGAATTCAAACCATCAGAGATTGCAGCAGCAGTGGCTACATATATTGTGGGGGAAACCCAAGCAATAGATGCTAGCAAATCAATTTCGACTCTGACTCAATACATGGAAAAGGAGAGATTAATGAAGTGTATTGAAAAGGTCGAAGCGATGTCATTGAACAGTATTGTGACTGGCAAGAATTCAATTGCATCAGTCCCTAGTGTGCCACAAAGTCCAATAGGTGTGTTGGATACTACATTGTGTTTCAGCTACAAGAGTGATGACACCACCAATGGTGGTGATGGTCCATGTTCTTCTTCACATAATAGTAGTCCAGAAGCTAAGAGGAGGAAGCTAAACAAAAGCTGTGGATCAGAGCTTTTGTAG 1083 0.4081 MAPSFDCASSLLCTEDTSVFDDGEHQGTVEVYEDSWRPRFDHRRGQGESVGVADELPLQSEECFGLMLEKECQQWVGEDYFDRFRFGDLDFGARNEAIDWILKVGAHFGFGPLCVYLSINYMDRFLSVYELPKGRVWTMQLLAIACLSLAAKLEETDVPMILDLQIGESKFLFEAKTIQRMELLVLSTLKWRMQSTTPFSFIEYFLTKINDSDNKSSLSSSISQSTKLISNTVKGIEFLEFKPSEIAAAVATYIVGETQAIDASKSISTLTQYMEKERLMKCIEKVEAMSLNSIVTGKNSIASVPSVPQSPIGVLDTTLCFSYKSDDTTNGGDGPCSSSHNSSPEAKRRKLNKSCGSELL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02011 360 SUPERFAMILY Cyclin-like 178 291 IPR036915 -
Vivi3g02011 360 CDD CYCLIN_AtCycD-like_rpt1 93 191 - -
Vivi3g02011 360 SMART cyclin_7 99 187 IPR013763 -
Vivi3g02011 360 CDD CYCLIN_AtCycD-like_rpt2 196 286 - -
Vivi3g02011 360 Gene3D - 77 194 - -
Vivi3g02011 360 MobiDBLite consensus disorder prediction 328 342 - -
Vivi3g02011 360 FunFam D2/4-type cyclin 77 189 - -
Vivi3g02011 360 Pfam Cyclin, C-terminal domain 197 292 IPR004367 -
Vivi3g02011 360 ProSitePatterns Cyclins signature. 94 125 IPR006671 -
Vivi3g02011 360 SUPERFAMILY Cyclin-like 59 193 IPR036915 -
Vivi3g02011 360 SMART Cyclin_C_2 196 323 IPR004367 -
Vivi3g02011 360 Gene3D - 67 285 - -
Vivi3g02011 360 MobiDBLite consensus disorder prediction 343 360 - -
Vivi3g02011 360 FunFam D6-type cyclin 190 284 - -
Vivi3g02011 360 Pfam Cyclin, N-terminal domain 64 193 IPR006671 -
Vivi3g02011 360 PANTHER CYCLINS 60 287 IPR039361 -
Vivi3g02011 360 MobiDBLite consensus disorder prediction 328 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02011 Vivi-Chr3 33404796 33407968 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02011 67 329 Core Cell Cycle Gene Families AT2G22490 50.000 3.29e-84 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02011 K18810 - gmx:547739 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02011 3 33404796 33407968 Vivi3g02011 3 33404796 33407968 ECH