Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02004 ATGCAAGCCTCTGGCTGCTTTTTCTTGTTCTTATTCTTCCTCTTTTCTTCGACATCTTTTCTCTCACACGCAATCTCCAATGACGAAGCATCTTCTATCGCCCGTCGTCAGATGTTACACCTAGAAGAAAACGACGATTTGCCGGACAATTACGCGGAAATTGTTAAGACAGAATTCACTTTTCCTAATCCCAATCTTAAACGCGCTTATGTAGCGCTTCAAGCGTGGAAGAAAGCGATCTATTCTGATCCAACGGGTGTGACCGAGAATTGGGTTGGTGCTGATGTTTGTTCCTACAAGGGAGTTTTCTGTGCACCTTCTGTTAATGATCCGAAAATCGAAGTTGTGGCTGGGATTGATCTTAATCATGCAGACATTGCAGGCTACATTCCTCCTGAGATTGGTTTGTTAACAGATCTTGCTCTCTTTCACATTAACACAAACAGATTCTGTGGGATTATTCCGAAAAGTTTTTCCAAGTTAGTACTTTTGCATGAGGTTGATATTAGTAACAACCGTTTTGTTGGAGAGTTTCCTCAACCTCTTCTTCCGCTTCCGGATGTAAAATTTATAGATATTAGGTTCAATAATTTCGAAGGAGAACTTCCGGGCGAGCTTTTCAATAAACCGCTCGACGCGATATTCTTAAACGACAATAGATTTACACATACAATTCCAGAGAATCTTGGAAATTCTCCGGCATCCGTTGTTGTTATTGCCAATAATGAGATCAGCGGTTGTATTCCTTCGAGCATTGGCGAGATGAAAACTACATTGGATGAGTTTGTTGCAACCAACAACAACCTTACCGGTTGTTTACCGGCTGAAGTTGGAAAGCTTGAAACAGCATACGTATTTGATGTGAGTGAAAATACGTTGGTTGGTGTGTTGCCAAGGACTTTGAAGGGAATGCAGAAAGTGGAAGTTTTGGCTATTGCGGATAATAAACTAACCGGTTTTGTTCCGAAGAGTGTGTGTACTTTGCCTAGTTTGGTAAACTTTACATTCTCTACAAATTATTTTAATGGTGAAGAAGAAGGTTGTGTGCCTCCAGGAAAAGATGTTTTGTTGGAGGATAAGGATAATTGTATACCTGGGAGGCCTAAACAGAAGACAGCAAATGATTGTAATGTGGTTATAAGTAAACCTGTTGATTGTAGCAAGGCACAATGTGGTCATGGTAGTGGAAGTGATCAAAAACAAACACCAAGTGAGAACCCATCACCTTCTGTGCCTAAGCCAGAGCCACAACCTACACCTTCTCCTTCAAAGCCTGATCCCAAACCTACACCTTCACCTTCACCTTCTAAACCAAGTGAGACTCCAACACCAATTCCGCAACCCAAACCAACTCCATCAAATGATAAGCCGGAACCCGAACCAACTCCATCCAAGCCGGAACCCAAACCAACTCCGGAACCTAAACCAACCCCAACTCCGTCGAAAGAAAAGCCGGAACCAGAACCTACCCCATCTAAAGAGAAGCCGGAACCAGAACCCACACCAACCCCAGAGACACCCAAAGCAGAACCACCTGAAGAGGATCCTCACAATGAAGCACCCAAAACAAGAACAAGATCTCCACCGCCGGTTCAATCCCCACCACCACCAGTTCAATCTCCACCACCTCCGGTTCAGTCACCTCCTCCACCAGTTCAATCTCCACCACCTCCTGTCAAATCACCTCCTCCACCAGTTCACTCTCCACCACCTCCGGTTCATTCACCACCACCTCCCGTCAGTTCACCTCCTCCACCAGTCCACTCTCCACCACCTCCAGTTCATTCACCACCACCTCCAGTCAAATCACCTCCTCCTCCAGTTCACTCTCCACCACCTCCGGTTCATTCCCCACCACCTCCCGTTAAATCTCCACCACCACCAGTCCACTCTCCACCTCCACCAGTACATTCTCCTCCTCCTCCAGTCCACTCCCCACCTCCACCAGTAAAATCACCACCACCTCCCGTCCACTCTCCACCTCCACCAGTAAAATCACCCCCACCTCCCGTCCACTCTCCTCCCCCACCAGTCCATTCTCCACCACCCCCAGTTCACTCTCCACCACCACCAGTTAACTCTCCACCTCCACCAGTCCACTCCCCACCCCCACCAGTAAAGTCTCCACCACCACCAGTCCACTCCCCACCACCACCAGTTTTCTCACCTCCACCACCAGTCCAATCTCCACCTCCACCGACTCAATCCCCTCCTCCTCCAGTTCAAGCACCACCTCCAGATTACGAAGATGTCATTCTCCCACCAGACTTTGGCTCTTCCTACGCTTCACCACCTCCACCAATCATCGCTGGATACTAA 2319 0.4752 MQASGCFFLFLFFLFSSTSFLSHAISNDEASSIARRQMLHLEENDDLPDNYAEIVKTEFTFPNPNLKRAYVALQAWKKAIYSDPTGVTENWVGADVCSYKGVFCAPSVNDPKIEVVAGIDLNHADIAGYIPPEIGLLTDLALFHINTNRFCGIIPKSFSKLVLLHEVDISNNRFVGEFPQPLLPLPDVKFIDIRFNNFEGELPGELFNKPLDAIFLNDNRFTHTIPENLGNSPASVVVIANNEISGCIPSSIGEMKTTLDEFVATNNNLTGCLPAEVGKLETAYVFDVSENTLVGVLPRTLKGMQKVEVLAIADNKLTGFVPKSVCTLPSLVNFTFSTNYFNGEEEGCVPPGKDVLLEDKDNCIPGRPKQKTANDCNVVISKPVDCSKAQCGHGSGSDQKQTPSENPSPSVPKPEPQPTPSPSKPDPKPTPSPSPSKPSETPTPIPQPKPTPSNDKPEPEPTPSKPEPKPTPEPKPTPTPSKEKPEPEPTPSKEKPEPEPTPTPETPKAEPPEEDPHNEAPKTRTRSPPPVQSPPPPVQSPPPPVQSPPPPVQSPPPPVKSPPPPVHSPPPPVHSPPPPVSSPPPPVHSPPPPVHSPPPPVKSPPPPVHSPPPPVHSPPPPVKSPPPPVHSPPPPVHSPPPPVHSPPPPVKSPPPPVHSPPPPVKSPPPPVHSPPPPVHSPPPPVHSPPPPVNSPPPPVHSPPPPVKSPPPPVHSPPPPVFSPPPPVQSPPPPTQSPPPPVQAPPPDYEDVILPPDFGSSYASPPPPIIAGY 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02004 772 MobiDBLite consensus disorder prediction 508 522 - -
Vivi3g02004 772 Pfam Leucine rich repeat N-terminal domain 71 104 IPR013210 -
Vivi3g02004 772 Gene3D Ribonuclease Inhibitor 68 352 IPR032675 -
Vivi3g02004 772 SUPERFAMILY L domain-like 70 346 - -
Vivi3g02004 772 MobiDBLite consensus disorder prediction 392 406 - -
Vivi3g02004 772 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 8 518 - -
Vivi3g02004 772 MobiDBLite consensus disorder prediction 389 772 - -
Vivi3g02004 772 PRINTS Proline rich extensin signature 435 447 - -
Vivi3g02004 772 PRINTS Proline rich extensin signature 397 409 - -
Vivi3g02004 772 PRINTS Proline rich extensin signature 413 429 - -
Vivi3g02004 772 PRINTS Proline rich extensin signature 452 473 - -
Vivi3g02004 772 MobiDBLite consensus disorder prediction 407 478 - -
Vivi3g02004 772 MobiDBLite consensus disorder prediction 527 751 - -
Vivi3g02004 772 MobiDBLite consensus disorder prediction 479 501 - -
Vivi3g02004 772 FunFam Leucine-rich repeat extensin-like protein 1 70 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02004 Vivi-Chr3 33297697 33300373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02004 24 526 Trihelix Transcription Factor Family AT4G33970 51.575 1.29e-170 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02004 - - gmx:100780677 595.89