LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g02002	ATGGCTATCCGTGTAACCTTCTCCTTCTCAGGCTATGTCGCCCAAAATCTAGTTTCCTCCGCCGGCGTTCGAGTCGCCAATTCTCGTTGTGTCCAAGAATGCTGCATCCTTTCCCGCTTCTTCGGAACCAACCAGAAACGCGATCTCGAACGTTCCGGCGGCGTTCGCAGTCTCTATCCCGATCTCAGGAGACCTAAAACTTCTGCCTATTCTACCCTCGCCGGAGAGATTCTCTCCGAAGGCTGTTCGAATCCGATCGTATTAGGTTTGATTTCGATGATGAAGTCAACGAGTGTTGTATCGGGGTCAACTTCGGCGGCTATGGGTATTATGGGAATTGCACCGTTCAAAACCTCTTCGATTATACCCTTTTTGCAGGGTTCCAAGTGGCTTCCTTGTAACGAGTCTGTTCCTGTTCCTGATTCTACAACGTGGGAGGTTGATAAAGGTGGAACGGAGTGTGTTACTGTTTCTACCACAAAATCGCGTTTGAGTCAGAAGGAAACTACTAGTGGTTGGATTTCGAAATTGTTGAATGTTTGTTCTGAAGATGCTAAAGCTGTTTTCACTGCTGTTACTGTTAGTTTTCTGTTTAAATCGTTTTTGGCTGAACCGAAATCTATTCCTTCTGCTTCTATGTATCCAACTCTTGAAGTTGGTGATCGTGTTTTAACAGAAAAGTTTTCTTTCTTCTTTAGAAAGCCAGATGTTTCTGATATTGTGATTTTCAAAGCACCTCCTTGTTTGAAGAAATATGGTTTTAGTTCATCTGATGTTTTTATAAAAAGGGTTGTGGCTAAGGCTGGTGATGTTGTCGAAGTTCGTGGTGGTAAACTACTAGTAAATGGTGTTGCTGAAGAAGAGGAATTTGTATTAGAACCTCTTGATTATGAGTTGGCTCCAATGGTTGTGCCAAAAGGACATGTGTTTGTGATGGGGGACAATCGTAACAAGAGTTTTGATTCTCATAACTGGGGTCCACTCCCGATTGAGAACATTGTTGGTAGGTCCATGTTTCGCTACTGGCCTCCATCCAAAGTTGTGGACACTGTCTCCGTTCATAACTCCCCACCTGGAAATAAGTCTGTGGCAGTTTCTTGA	1101	0.4387	MAIRVTFSFSGYVAQNLVSSAGVRVANSRCVQECCILSRFFGTNQKRDLERSGGVRSLYPDLRRPKTSAYSTLAGEILSEGCSNPIVLGLISMMKSTSVVSGSTSAAMGIMGIAPFKTSSIIPFLQGSKWLPCNESVPVPDSTTWEVDKGGTECVTVSTTKSRLSQKETTSGWISKLLNVCSEDAKAVFTAVTVSFLFKSFLAEPKSIPSASMYPTLEVGDRVLTEKFSFFFRKPDVSDIVIFKAPPCLKKYGFSSSDVFIKRVVAKAGDVVEVRGGKLLVNGVAEEEEFVLEPLDYELAPMVVPKGHVFVMGDNRNKSFDSHNWGPLPIENIVGRSMFRYWPPSKVVDTVSVHNSPPGNKSVAVS	366

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g02002	366	FunFam	Peptidase/ serine-type peptidase	210	341	-	-
	Vivi3g02002	366	SUPERFAMILY	LexA/Signal peptidase	200	346	IPR036286	-
	Vivi3g02002	366	CDD	S26_SPase_I	204	336	IPR019533	GO:0004252\|GO:0006465
	Vivi3g02002	366	ProSitePatterns	Signal peptidases I serine active site.	210	217	IPR019756	GO:0004252\|GO:0016020
	Vivi3g02002	366	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	201	217	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vivi3g02002	366	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	260	272	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vivi3g02002	366	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	304	323	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vivi3g02002	366	ProSitePatterns	Signal peptidases I signature 3.	309	322	IPR019758	GO:0004252\|GO:0016020
	Vivi3g02002	366	NCBIfam	signal peptidase I	187	343	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vivi3g02002	366	PANTHER	SIGNAL PEPTIDASE I	171	348	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vivi3g02002	366	Gene3D	Umud Fragment, subunit A	198	355	-	-
	Vivi3g02002	366	Pfam	Signal peptidase, peptidase S26	185	342	IPR019533	GO:0004252\|GO:0006465

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g02002	Vivi-Chr3	33273569	33276056	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g02002	213	343	MADS-box Gene Family	AT1G29960	34.091	1.02e-13	65.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g02002	K03100		-	gmx:100817525	517.694

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi3g02002	3	33273569	33276056	Vivi3g02002	3	33273569	33276056	ECH