Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01975 ATGACGACTCCTGCTTCTTCTAGTTCTAACAAACCTTCTTCTCCGAATCAAGGGAAGGGGAAGGGACAATCGATTCAGCAGCGGAGGTTGACGAGGCAGAAGAGGCTGTTTTACCCTAGCGATCAAGACGGTGAAGGGTTTCTTTCGACGGAAGGTGTTTCGTTTTCGTTGCCAGGGTCGCCTTTGAGGTCTAGCTTGGATCATTGGTCTTGTTCCGCTGTTCCGTTGCCGCTTCCGTTGCCGGAATCGCCGTTGACTCGACGGCCGGATCATCATGCTGCGTTACCGTCTTCCAGAAAGACGGGGGATCATGATGCTGTGAGAAGTTCAAGGTCTTCCAGCAATTTAGGTAGATCCTTTTTTGCCACGGTGACTGGAAATGCAAAGAATGATTTAAGAGTCAATATTCCTCCTGTTAGAAGCTTGGTGACAAGCAACAGCTCTTGTAAAGATACTAGAAAACATTCTCATGACAATGAGTGTGAAGGTCTTGCGAATGGGAAGTTGCAATTTGCTGCTAGGAGTGCCCCAACAAGCATATTCTCCAGTCCTGTTACTAGTCCGCGCAGATTAAGCAATGTAGAATTATTTGATCCTTCCATCAATTTTCCTCAAGATTTTAATGACATTTTGAGGCTGCCTAAAACTTCTCATAGTCCAGACTTGTCTCCTCGTCGTAGCTTGGGGAACCACAGTCCTAAACACCACCACACTATTCAAGGAGGATCTCATTCTCACCAATCTAAATTTTGCACTAGGGTGTGGCCGGAAAATAACCATGCCGATGCACATCCATTGCCTCTTCCACCGAGAGCTTCACCACAGCCACAACAATCCCCTTCACATTCACAACATCAATCAAGTGCCACAACGCATCACTCAACAGAAAATTTCCATTCAATGAAGGGTCAATGGCAGAAAGGAAAACTAATCGGACGAGGATCATTTGGAAGTGTTTATCATGCAACAAACCTAGAGACTGGAGCCTCATGTGCCTTGAAAGAGGTAGATCTGTTTCCTGATGATCCTAAATCTGCTGACTGTATAAAGCAACTCGACCAGGAAATCAGGATTCTTGGTCAGCTAAACCACCCCAACATTGTACAATATTATGGCAGTGAAGAAGTTGGTGATCGATTGTGCATATATATGGAATTTGTCCATCCTGGATCACTTCAGAAGTTTATGCAAGAACATTGTGGGGCTCTGACAGAATCTGTGGTTCGCAATTTTACGAGGCATATTCTCTCTGGATTGGAGTACCTACACAGTAACAACACTATCCACAGGGACATTAAAGGTGCAAACTTGCTAGTTGATGCATCAGGCATTGTCAAGCTTGCAGATTTTGGGGTGTCGAAAATTCTGACAGAGAAATCATATGAACTTTCACTGAAAGGAAGTCCCTATTGGATGGCTCCAGAGCTCATGATGGCTACCATGAAGAAAGAAAGCAATCCCAACGTCGCCATGGCTGTTGATATATGGAGCTTAGGATGCACAATCATCGAAATGCTGACAAGTAAACCCCCTTGGAGCGAGTATTCAGGGCACCAAGCCATGTTCAAGGTACTGCACAGATCCCCAGACATACCCGAGACTTTATCTCCAGAAGGCCGGGATTTCCTTGAGCAGTGTTTCCAAAGGAATCCTGCAGATCGACCATCTGCAGCGGTGCTTCTAACACATGCCTTTGTACAAAATTTGCATGATCACGAAGTTATAGTCCATTCACTAGACTGCCATAAAGAACACACCACAGTTCATTCACAAGGATTTCAAAAAGAAGAAGACTCTGGACCCAAAGATGAATCTCGTAAGCAAAGTCCAGGACACAGTTCAAAAAATAGCCGCGGTATAGTGCCAGCCTCCTTTGGTGCACGATTTTTTTGCAAAATTCAAAGTTTGATCGGTGACACTTCCAAAAAAGCTAATACCGAGGAATCTAATCACATTAGATCTTCTCCTGTATCTCCTCGTCCGCGGACAGAAACTAACAGTCCTCAATCTCCCTTTAAATCTAACAACCGCAACTGCATGACTGTTACCAAATCCTCCAACATACCCTTCACCGTTATGAGATTCGTGAAGCACCTGTGA 2100 0.4481 MTTPASSSSNKPSSPNQGKGKGQSIQQRRLTRQKRLFYPSDQDGEGFLSTEGVSFSLPGSPLRSSLDHWSCSAVPLPLPLPESPLTRRPDHHAALPSSRKTGDHDAVRSSRSSSNLGRSFFATVTGNAKNDLRVNIPPVRSLVTSNSSCKDTRKHSHDNECEGLANGKLQFAARSAPTSIFSSPVTSPRRLSNVELFDPSINFPQDFNDILRLPKTSHSPDLSPRRSLGNHSPKHHHTIQGGSHSHQSKFCTRVWPENNHADAHPLPLPPRASPQPQQSPSHSQHQSSATTHHSTENFHSMKGQWQKGKLIGRGSFGSVYHATNLETGASCALKEVDLFPDDPKSADCIKQLDQEIRILGQLNHPNIVQYYGSEEVGDRLCIYMEFVHPGSLQKFMQEHCGALTESVVRNFTRHILSGLEYLHSNNTIHRDIKGANLLVDASGIVKLADFGVSKILTEKSYELSLKGSPYWMAPELMMATMKKESNPNVAMAVDIWSLGCTIIEMLTSKPPWSEYSGHQAMFKVLHRSPDIPETLSPEGRDFLEQCFQRNPADRPSAAVLLTHAFVQNLHDHEVIVHSLDCHKEHTTVHSQGFQKEEDSGPKDESRKQSPGHSSKNSRGIVPASFGARFFCKIQSLIGDTSKKANTEESNHIRSSPVSPRPRTETNSPQSPFKSNNRNCMTVTKSSNIPFTVMRFVKHL 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01975 699 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 28 577 - -
Vivi3g01975 699 MobiDBLite consensus disorder prediction 641 678 - -
Vivi3g01975 699 MobiDBLite consensus disorder prediction 212 304 - -
Vivi3g01975 699 MobiDBLite consensus disorder prediction 587 611 - -
Vivi3g01975 699 MobiDBLite consensus disorder prediction 1 33 - -
Vivi3g01975 699 Gene3D Transferase(Phosphotransferase) domain 1 302 607 - -
Vivi3g01975 699 SMART serkin_6 305 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g01975 699 ProSitePatterns Protein kinases ATP-binding region signature. 311 334 IPR017441 GO:0005524
Vivi3g01975 699 MobiDBLite consensus disorder prediction 650 678 - -
Vivi3g01975 699 SUPERFAMILY Protein kinase-like (PK-like) 278 577 IPR011009 -
Vivi3g01975 699 MobiDBLite consensus disorder prediction 1 51 - -
Vivi3g01975 699 ProSiteProfiles Protein kinase domain profile. 305 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g01975 699 MobiDBLite consensus disorder prediction 85 107 - -
Vivi3g01975 699 MobiDBLite consensus disorder prediction 587 620 - -
Vivi3g01975 699 Pfam Protein kinase domain 306 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g01975 699 FunFam Predicted protein 301 587 - -
Vivi3g01975 699 MobiDBLite consensus disorder prediction 277 302 - -
Vivi3g01975 699 MobiDBLite consensus disorder prediction 82 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01975 Vivi-Chr3 32559614 32565501 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01975 137 568 MAP Kinase Kinase Kinase AT5G66850 50.833 2.52e-146 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vivi3g01975 Pkinase 3.4e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01975 - - gmx:100781764 805.053