Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01966 ATGAATTTGAATATGAATATAAATTTTGAAGCAATGAATAGAAGCTCTTCAACGACAACTTCTTCATCCGATTCTTGTTCATCGGAATCGAATCCGTTGAATCGGAGCAAAGTAGATAGGATCAAAGGTCCATGGAGTGCTGAAGAAGATAGAATTCTAACGCGGCTGGTTGAACAGCTCGGAGCGAGAAACTGGTCGTTGATTAGCCGGTATATAAAAGGGAGGTCCGGTAAGTCTTGCAGACTCCGGTGGTGTAATCAGCTGAGTCCAACGGTGGAGCACCGTCCGTTCTCGTCGCAAGAGGATGAAACAATCATAGCGGCGCATGGTCAATACGGGAACCGTTGGGCAACCATTGCGCGTCTTTTACCGGGTAGAACTGATAATGCTGTGAAGAATCATTGGAACTCGACGCTTAAGAGAAGAGCAAGTGGTCGCTGTGGCGGTGGTGATTCTGTTACGGTTGCCGGAGCGGTTAGTGGTGGCAACGAAGGGGGAAATAATTCTTCCGGTCCGTTTGCTCGATCTTGTTTTGCGGCGGAGGATGATCCGTTGACCGCGTTGACTCTTGCACCTCCGGGAATTATTAATGGCGGTGCTGTGGAAGAACAGGAGGAGGCGGTGGCTGATCATCAACCGTCACCGTCGCCGGAGAATGTTCCGTCGGCGTTCTGGGATGTGATGAGAGGTGTGATTGCAAAGGAAGTTAGGGAATATGTTTCTTCTAATTTTTCTCATAACTCTGGTTTTCATTGA 756 0.4828 MNLNMNINFEAMNRSSSTTTSSSDSCSSESNPLNRSKVDRIKGPWSAEEDRILTRLVEQLGARNWSLISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSSQEDETIIAAHGQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRASGRCGGGDSVTVAGAVSGGNEGGNNSSGPFARSCFAAEDDPLTALTLAPPGIINGGAVEEQEEAVADHQPSPSPENVPSAFWDVMRGVIAKEVREYVSSNFSHNSGFH 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01966 251 Gene3D - 41 93 - -
Vivi3g01966 251 SUPERFAMILY Homeodomain-like 39 135 IPR009057 -
Vivi3g01966 251 MobiDBLite consensus disorder prediction 1 34 - -
Vivi3g01966 251 MobiDBLite consensus disorder prediction 1 41 - -
Vivi3g01966 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 92 IPR017930 -
Vivi3g01966 251 PANTHER MYB PROTEIN-RELATED 42 208 - -
Vivi3g01966 251 Pfam Myb-like DNA-binding domain 45 103 - -
Vivi3g01966 251 CDD SANT 96 139 IPR001005 -
Vivi3g01966 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 143 IPR017930 -
Vivi3g01966 251 FunFam MYB transcription factor 42 93 - -
Vivi3g01966 251 SMART sant 93 141 IPR001005 -
Vivi3g01966 251 SMART sant 41 90 IPR001005 -
Vivi3g01966 251 Gene3D - 96 142 - -
Vivi3g01966 251 ProSiteProfiles Myb-like domain profile. 37 88 IPR001005 -
Vivi3g01966 251 ProSiteProfiles Myb-like domain profile. 89 139 IPR001005 -
Vivi3g01966 251 CDD SANT 44 86 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01966 Vivi-Chr3 32480380 32481789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01966 39 195 MYB Transcription Factor Family AT3G50060 59.236 5.11e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi3g01966 Myb_DNA-bind_6 1.5e-15 CL0123