Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01941 ATGGTGGCAAAAATGGTGGCAGATTCTTATGAAGATAGCCGTCGCAAAAGAATGGAAGAGAATCGGAAGAGGATGGAAGCTCTCAATCTTCCTCAACTCTCTCGATCCCTTCACAAATCATCTTCTCCCATTTCAAAACCCTCGCCGTCCAAATCTCGCACCGTCAAGAAAGAGCTCGTCGTCGTTCGAAGATCCGGCCGTGTCGCCAACTTGCCTGCTCCCGTTTACAAAGAAGTTCTTATTGATCGCGTTGTAATGCCGGGAAGATCTTCAAGAGGAGGTTATAATATGTATAGGGATTATTCAAAGCGTGTGTATGCTTCCGATGAAGCTCGAGTGGAAGCGTTGGACAAGGCGGAGAAGTTGCAGGCCGAATTAAACTCGAAGAATCCAATTTTTATTAAGACAATGCTTCAATCTCATGTCACTGGTGGATTCTGGCTGGGCCTTCCAGTTTATTTCTGCAAGCAAAACCTTCCAGAAAAGGACGAAGTGCTGACCTTGATTGATGAGGATGGAGATGAGTTTTCAACTACATATTTGGCTTATAAAACAGGACTTAGCGCTGGCTGGAGAGGTTTTGCCATTGCTCATAAACTTGCTGACGGGGACGCTTTAATTTTTGAATTAGTTAATCGCACTACATTCAAGGTGTACATTATTAGAGTGAATGGCAGTCCTTCAGAGGGTGAAGAGCAGGAGTGA 705 0.4468 MVAKMVADSYEDSRRKRMEENRKRMEALNLPQLSRSLHKSSSPISKPSPSKSRTVKKELVVVRRSGRVANLPAPVYKEVLIDRVVMPGRSSRGGYNMYRDYSKRVYASDEARVEALDKAEKLQAELNSKNPIFIKTMLQSHVTGGFWLGLPVYFCKQNLPEKDEVLTLIDEDGDEFSTTYLAYKTGLSAGWRGFAIAHKLADGDALIFELVNRTTFKVYIIRVNGSPSEGEEQE 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01941 234 Pfam B3 DNA binding domain 133 222 IPR003340 GO:0003677
Vivi3g01941 234 SUPERFAMILY DNA-binding pseudobarrel domain 126 225 IPR015300 -
Vivi3g01941 234 MobiDBLite consensus disorder prediction 8 26 - -
Vivi3g01941 234 CDD B3_DNA 131 222 IPR003340 GO:0003677
Vivi3g01941 234 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 46 224 IPR044837 -
Vivi3g01941 234 SMART B3_2 133 224 IPR003340 GO:0003677
Vivi3g01941 234 MobiDBLite consensus disorder prediction 1 55 - -
Vivi3g01941 234 MobiDBLite consensus disorder prediction 33 50 - -
Vivi3g01941 234 Gene3D - 108 225 IPR015300 -
Vivi3g01941 234 ProSiteProfiles B3 DNA-binding domain profile. 133 224 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01941 Vivi-Chr3 32119920 32127544 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01941 9 232 B3 DNA Binding Superfamily AT3G19184 53.247 5.49e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi3g01941 B3 1.9e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01941 - - psat:127088162 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01941 3 32119920 32127544 Vivi3g01941 3 32119920 32127544 ECH