Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01940 ATGGTGGCTACATCTTATGAAGAGAGTCGCCGGAAAAGAATAGAAGAGAATCGGAAGAGGATGGAGGCTCTCAATCTCACTCAGCTTTCTCAATCCCTTCACAAATCATCTTCTCCCATTTCAAAACCCTCGCCGTCGAAGCCTCGCACCACGGAGAAGCAGCTTGTTGTTGTCAGAAGATCCGGGCGGGTCGCCAACTTGCCTGCTCCCGTTTACAAAGAAATTCTTGTTGATCGCGTTATAATACCTAGAAGTAGAAATTCAAGTGGATGTAGTTATGATAAGTTCAGGGATTATTCGAAGCGTGTATATGCTTCAGATGAAGCTCGAGAGGAAGCATTGGTCAAGGCTGAGAAGTTGCAGTCCGAGTTAAACTCACCACATCCAATTTTTATCAAGACAATGCTCCAATCTCATGTCACTGGTGGATTCTGGCTGGGTCTTCCAGTTCATTTCTGCAGGAAAAACCTTCCAAAAAAGGACGAAGTGATGACTTTGATTGATGAGGATGGAAATGAGACTCCAGCTACATATTTGGCTCAAAAAACAGGACTTAGCGGTGGATGGAGAGGTTTTTCTATTGCTCATAAACTTGCTGACGGGGACGCTATAATTTTTGAATTAGTTAAACGCACTACATTTAAGGTGTACATTATTAGAGTGAATGGTCCTTCATTCAGAGGTTAA 687 0.4309 MVATSYEESRRKRIEENRKRMEALNLTQLSQSLHKSSSPISKPSPSKPRTTEKQLVVVRRSGRVANLPAPVYKEILVDRVIIPRSRNSSGCSYDKFRDYSKRVYASDEAREEALVKAEKLQSELNSPHPIFIKTMLQSHVTGGFWLGLPVHFCRKNLPKKDEVMTLIDEDGNETPATYLAQKTGLSGGWRGFSIAHKLADGDAIIFELVKRTTFKVYIIRVNGPSFRG 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01940 228 MobiDBLite consensus disorder prediction 1 53 - -
Vivi3g01940 228 ProSiteProfiles B3 DNA-binding domain profile. 131 222 IPR003340 GO:0003677
Vivi3g01940 228 MobiDBLite consensus disorder prediction 1 22 - -
Vivi3g01940 228 CDD B3_DNA 129 220 IPR003340 GO:0003677
Vivi3g01940 228 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 47 222 IPR044837 -
Vivi3g01940 228 SMART B3_2 131 222 IPR003340 GO:0003677
Vivi3g01940 228 SUPERFAMILY DNA-binding pseudobarrel domain 124 222 IPR015300 -
Vivi3g01940 228 Gene3D - 106 223 IPR015300 -
Vivi3g01940 228 MobiDBLite consensus disorder prediction 23 51 - -
Vivi3g01940 228 Pfam B3 DNA binding domain 131 220 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01940 Vivi-Chr3 32101765 32106251 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01940 5 222 B3 DNA Binding Superfamily AT3G19184 55.856 1.07e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi3g01940 B3 3.6e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01940 - - gmx:100797091 299.286