Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01930 ATGGTGGCAAAAATGGTGGCAGATTCTTATGAAGATAGCCGTCGCAAGAGAATGGAAGAGAATCGGAAGAGGATGGAAGCTCTCAATCTTCCTCAACTCTCTCGATCCCTTCACAAATCATCTTCTCCCATTTCAAAACCCTCGCCGTCCAAATCTCGCACCGTCAAGAAAGAGCTCGTCGTCGTTCGAAGATCCGGCCGTGTCGCCAACTTGCCTGCTCCTGTTTACAAAGAAATTCTAATTGATCGCGTTGTAATGCCGGGAAGATCTTCAAGAGGAGGTTACAATATGTATAGGGACTATTCGAAGCGTGTATATGCTTCCGATGAAGCTCGAGTGGAAGCGTTGGACAAGGCGGAGAAGTTGCAGGCCGAATTAAACTCGAAGCATCCAATTTTTATTAAGACGATGCTTCAATCTCATGTCACTGGTGGATTCTGGCTGGGCCTTCCAGTTTATTTCTGCAAGCAAAACCTTCCAGAAAAGGACGAAGTGATGACCTTGATTGATGAGGATGGAGATGAGTATTCAACTACATATTTGGCTTATAAAACAGGACTTAGCGCTGGCTGGAGAGGTTTTGCCATTGCTCATAAACTTGCTGATGGGGACGCTTTAATTTTTGAATTAGTTAATCGCACTACATTCAAGGTGTACATTATTAGAGTGAATGGCAGTCCTTCAGAGGGTGAAGAGCTCGAGTAA 705 0.4468 MVAKMVADSYEDSRRKRMEENRKRMEALNLPQLSRSLHKSSSPISKPSPSKSRTVKKELVVVRRSGRVANLPAPVYKEILIDRVVMPGRSSRGGYNMYRDYSKRVYASDEARVEALDKAEKLQAELNSKHPIFIKTMLQSHVTGGFWLGLPVYFCKQNLPEKDEVMTLIDEDGDEYSTTYLAYKTGLSAGWRGFAIAHKLADGDALIFELVNRTTFKVYIIRVNGSPSEGEELE 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01930 234 SUPERFAMILY DNA-binding pseudobarrel domain 126 225 IPR015300 -
Vivi3g01930 234 SMART B3_2 133 224 IPR003340 GO:0003677
Vivi3g01930 234 MobiDBLite consensus disorder prediction 8 26 - -
Vivi3g01930 234 CDD B3_DNA 131 222 IPR003340 GO:0003677
Vivi3g01930 234 Pfam B3 DNA binding domain 133 222 IPR003340 GO:0003677
Vivi3g01930 234 MobiDBLite consensus disorder prediction 1 55 - -
Vivi3g01930 234 Gene3D - 108 225 IPR015300 -
Vivi3g01930 234 ProSiteProfiles B3 DNA-binding domain profile. 133 224 IPR003340 GO:0003677
Vivi3g01930 234 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 46 224 IPR044837 -
Vivi3g01930 234 MobiDBLite consensus disorder prediction 33 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01930 Vivi-Chr3 31754559 31757327 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01930 9 233 B3 DNA Binding Superfamily AT3G19184 53.448 1.21e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi3g01930 B3 1.8e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01930 - - psat:127088162 335.109