Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01914 ATGGACTGTAACAATAGCCAGTTAAAGTCATCCTCTTCATCCTCAGAGGAACAAATTGACATGATGTTGATGATGATGATGCAACTCCCTGAATTCTCTTCACCCAACAACAACAACAACACCAATGAATTTCCACCGTCAGATCAAGACTTCTATACTTCACCAAATCCTAACAATAACACACGCCCTCTTGCAGATTTAATCGATAACCCTCCAAATCCATTCCCATGGTCATCATCTTCGTCTTCGTCTTCATCACTACCCTTACAAACAACAAACAATATCTCTTTCACTAACAACAACAACTCCACTACTCCATTAATCCTCCAACAACCACCGTTAATGTTTTCGGATTCCCACCACACCGTTGCGAATCCGAATCATTACGGTGCATCTGAGAAGAGAACCTCGATGGCGGCGATGAGGGAGATGATATTCCGAATAGCAGCGATGCAACCGATTTACATAGACCCGGAATCAGTGAAACCGCCAAAGAGACGGAACGTGAAGATCTCGAAAGATCCTCAGAGTATCGCAGCTAGACACCGAAGAGAAAGAATAAGCGAGAAGATAAGAATACTTCAAAGAATGGTGCCGGGTGGAACGAAGATGGATACTGCATCAATGTTGGATGAAGCTATTCATTATGTGAAATTCCTCAAGACACAGTTGAAGACATTGCAGGAACATGCCAACAATAACAGACCAGTTGCTGGTGCAGGTTCAGCGATAGGGTTCCCTGTTTCATTGCCTAAGCCTTATCAAGCTCGTAATGTTGATCATTATGGTGATTAA 795 0.4289 MDCNNSQLKSSSSSSEEQIDMMLMMMMQLPEFSSPNNNNNTNEFPPSDQDFYTSPNPNNNTRPLADLIDNPPNPFPWSSSSSSSSSLPLQTTNNISFTNNNNSTTPLILQQPPLMFSDSHHTVANPNHYGASEKRTSMAAMREMIFRIAAMQPIYIDPESVKPPKRRNVKISKDPQSIAARHRRERISEKIRILQRMVPGGTKMDTASMLDEAIHYVKFLKTQLKTLQEHANNNRPVAGAGSAIGFPVSLPKPYQARNVDHYGD 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01914 264 MobiDBLite consensus disorder prediction 31 66 - -
Vivi3g01914 264 FunFam BHLH transcription factor 174 238 - -
Vivi3g01914 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 220 IPR011598 GO:0046983
Vivi3g01914 264 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 11 236 IPR045843 GO:0003700|GO:0006355
Vivi3g01914 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 230 IPR036638 GO:0046983
Vivi3g01914 264 Pfam Helix-loop-helix DNA-binding domain 178 220 IPR011598 GO:0046983
Vivi3g01914 264 CDD bHLH_AtIND_like 172 230 - -
Vivi3g01914 264 MobiDBLite consensus disorder prediction 31 106 - -
Vivi3g01914 264 MobiDBLite consensus disorder prediction 73 106 - -
Vivi3g01914 264 Gene3D - 170 237 IPR036638 GO:0046983
Vivi3g01914 264 SMART finulus 177 226 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01914 Vivi-Chr3 31434789 31435955 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01914 126 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 72.951 4.43e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi3g01914 HLH 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01914 - - vvo:131657812 332.798