Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01906 ATGAATTTCAAGGGTTTTGGGAATGATCCGGACGCCTCCGTGGCTGGCGGAGGTGGGAGGACGACGGCGGGGAGCTTTTCTCTGGCGCGGCAGTCGTCGGTGTACTCGTTGACGATTGATGAATTTATGAATAGTATGGGAGGTTCTGGGAAAGATTTTGGATCAATGAACATGGATGAGTTGTTGAAGAATATTTGGACTGCAGAAGAGGTTCAAACAATGGGTGGTGAAGAGGCTGTTAGTAATCATTTGCAGAGGCAAGGCTCTTTGACGCTGCCGCGGACGCTTAGTCAGAAGACAGTTGATGAAGTTTGGAAGGATATTTCGAAGGATTATGGTCCTAGTTTGGCTGCACCACAGGCTCAAAGGCAGCCAACTTTGGGGGAGATGACTTTGGAGGAGTTTTTGGTTAGAGCTGGTGTTGTTAGGGAAGATGCGAAACCGAATGATGGGGTTTTTCTCGATCTAGCGCGGGTTGGGAATAATAGTAATTTGGGTTTGGCTTTTCAGGCTCAGCAGATGAATAAAGTTGCTGGTTTTATGGGTGGTAATAATAGAATGAATGGTGGTACTAATGATGATCCACTTGTTGGTCTTCAGAGTCCTACTAATTTGCCGTTGAATGTGAATGGGATTAGATCCGCGAATCAGCAACAGATGCAGAGTTCAGTGTCTCAGCAACAAGTTCAGAATCAACAACTTCAGCAACATCAACTTCAGCAGCAACAACAGCAACAGCAACATCAGCAGCAGCAGATATTTCCTAAGCAACCTGTTTTGAACTATGCAACTCAGATGCCTTTGTCTAATAATCAAGCACTGAGAGGTGGAATTATGGGGCTTTCTCCTGATCAAGGCATGAATGCTAATCTTGTGCAAGGTGGAGGGATTGGTATGGTTGGTTTGGCACCTGGGGCTGTTCAAATTGGTGCCGTGTCACCAGCTAACCAAATATCTGGTGATAAACTTGGAAAGTCTAATGGGGATACTTCTTCCGTGTCGCCGGTTCCTTATGTATTTAATGGTGGTATGCGAGGAAGGAAGGGTAATGGAGCTGTGGAGAAGGTAATTGAGAGGAGGCAGAGAAGAATGATAAAGAATAGAGAGTCAGCTGCTAGATCTCGCGCTCGCAAGCAGGCTTATACCATGGAATTGGAAGCAGAAGTTGCAAAATTAAAAGAAGAGAATGAAGAACTTCAGAAAAAGCAGGAAGAAATCATGGAAATTCAGAAAAATCAAGTTAAAGAAATGATGAATTTGCAGCGAGAAGTCAAGAGAAAATGCTTAAGACGAACACAAACCGGTCCATGGTAG 1314 0.446 MNFKGFGNDPDASVAGGGGRTTAGSFSLARQSSVYSLTIDEFMNSMGGSGKDFGSMNMDELLKNIWTAEEVQTMGGEEAVSNHLQRQGSLTLPRTLSQKTVDEVWKDISKDYGPSLAAPQAQRQPTLGEMTLEEFLVRAGVVREDAKPNDGVFLDLARVGNNSNLGLAFQAQQMNKVAGFMGGNNRMNGGTNDDPLVGLQSPTNLPLNVNGIRSANQQQMQSSVSQQQVQNQQLQQHQLQQQQQQQQHQQQQIFPKQPVLNYATQMPLSNNQALRGGIMGLSPDQGMNANLVQGGGIGMVGLAPGAVQIGAVSPANQISGDKLGKSNGDTSSVSPVPYVFNGGMRGRKGNGAVEKVIERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELQKKQEEIMEIQKNQVKEMMNLQREVKRKCLRRTQTGPW 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01906 437 Pfam bZIP transcription factor 359 410 IPR004827 GO:0003700|GO:0006355
Vivi3g01906 437 Gene3D - 357 426 - -
Vivi3g01906 437 Coils Coil 375 427 - -
Vivi3g01906 437 SMART brlzneu 355 420 IPR004827 GO:0003700|GO:0006355
Vivi3g01906 437 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 362 377 IPR004827 GO:0003700|GO:0006355
Vivi3g01906 437 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 357 408 IPR004827 GO:0003700|GO:0006355
Vivi3g01906 437 CDD bZIP_plant_BZIP46 359 413 - -
Vivi3g01906 437 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 28 437 IPR043452 GO:0003700|GO:0045893
Vivi3g01906 437 MobiDBLite consensus disorder prediction 185 209 - -
Vivi3g01906 437 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 357 414 - -
Vivi3g01906 437 SUPERFAMILY Leucine zipper domain 359 408 IPR046347 GO:0003700|GO:0006355
Vivi3g01906 437 MobiDBLite consensus disorder prediction 1 23 - -
Vivi3g01906 437 Coils Coil 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01906 Vivi-Chr3 31225964 31229847 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01906 20 437 bZIP Transcription Factor Family AT3G19290 46.396 1.95e-93 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vivi3g01906 bZIP_1 3.4e-13 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01906 3 31225964 31229847 Vivi3g01906 3 31225964 31229847 ECH