Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01903 ACAAACAATATCTCTTTCACTAACAACAACAACTCCACCACTCCACTAATCCTCCAACAACCACCGTTAATGTTTTCGGATTCGCACACGGCTGGTGCAAATCCGAACAATTACGGTGCATCTGAGAAGAGAACCTCCATGGCGGCGATGAGGGAGATGATATTCCGAATAGCAGCGATGCAACCGATTTACATAGACCCGGAATCAGTGAAACCTCCAAAGAGACGAAACGTGAAGATCTCGAAAGATCCTCAGAGTATCGCAGCGAGACACCGAAGAGAAAGAATAAGCGAGAAGATAAGAATTCTCCAAAGAATGGTGCCTGGTGGAACAAAGATGGATACTGCATCAATGTTGGATGAAGCTATTCATTATGTGAAATTCCTCAAGACACAGTTGAAGACATTGCAGGAACATGCCAACAATAACAGACCAGTTGCTGGTGCAGGTTCAGCGATAGGGTTCCCTGTTTCATTGCCTAAGCCTTATCAAGCTCGTAATGTTGATCATTATGGTGATTAA 522 0.4406 TNNISFTNNNNSTTPLILQQPPLMFSDSHTAGANPNNYGASEKRTSMAAMREMIFRIAAMQPIYIDPESVKPPKRRNVKISKDPQSIAARHRRERISEKIRILQRMVPGGTKMDTASMLDEAIHYVKFLKTQLKTLQEHANNNRPVAGAGSAIGFPVSLPKPYQARNVDHYGD 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01903 173 CDD bHLH_AtIND_like 81 139 - -
Vivi3g01903 173 Gene3D - 79 146 IPR036638 GO:0046983
Vivi3g01903 173 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 80 129 IPR011598 GO:0046983
Vivi3g01903 173 SMART finulus 86 135 IPR011598 GO:0046983
Vivi3g01903 173 FunFam BHLH transcription factor 83 147 - -
Vivi3g01903 173 Pfam Helix-loop-helix DNA-binding domain 87 129 IPR011598 GO:0046983
Vivi3g01903 173 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 84 139 IPR036638 GO:0046983
Vivi3g01903 173 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 33 145 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01903 Vivi-Chr3 31156088 31156779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01903 35 154 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 72.951 6.37e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi3g01903 HLH 5.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01903 - - vvo:131657812 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01903 3 31156088 31156779 Vivi3g01903 3 31156088 31156779 ECH