Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01900 ATGATGACTTCCTCAAGTGTTCAACATGTTTCAGAATGTTTCATCAAACCACTACACCCTATACCAGATTCAAACCGAATCTGCCATTTGACAACATGGGATATCGCCAGGTCGTCTATGAACTACATCCAGAAAGGCCTCTTATTCAAAAAACCAAATAACCAACAAGATTTCATCGATAATCTGTTGGAGAAGCTCAAACAATCGCTTTCTCTTGCTCTATTCCATTTCTATCCTCTATCCGGCCGTATTGTTACACAAAAATCTCAAGACCCTCCATCTTATTCTATTTTCGTCGATTGCAGTAACAATAATCCCGGAGCTAAATTCATCTATGCAACTTTGGATGTAACCGTATCTGATATCCTTGCCCCAATTGATGTTCCACCATTTGTTAAGTCATTGTTTGATCTCAACAAAGCAGTCAATCACGACGGTCACACTTTGCCTTTGTTATCCGTCCAAGTCACTGAGCTAGTAGATGGTGTTTTCATAGGTTGTTCCATGAATCACTATATCGGAGACGGAACTTCTTATTGGAAGTTCTTTAATACATGGTCTGAAATATTTCAAGCTCAAGGCCAAGGCTATGAGCATGATGTTCCCATTTCATGCCAACCCTTTCACAATCGTTGGTTTCCGGAAGGTTACGGTCCACCAATCAATCTTCCATTCAAACATCATGATGAGTTTGTAAGCAGATTTGAATCACCCAAGCTGAGAGAAAGAATCTTCCACTTTACATCAGAGTCTATTGCAAAACTGAAAGCAAAGGCTAATAAGGAGTGTAATACAAACAAAATCTCTTCGTTCCAATCCTTATCAGCGCATGTTTGGAGAAGTATAACTCGTGCTCGCCGCCTAGCAAATGATAGAAAAACAAATTGTATGGTGGCTGTAAACAACCGGCCGAGAATGAAACCACCTCTCTCTGAAGAGTACTTTGGGACCTCAGTTGATACAGTGAATGCAGAAGCGACGGCAGGAGAATTGCTTGAGAATGACTTGGGATGGGCGGCATGGAAGGTTCATGTTGCTGTTACAAAGCATGATGACTTAGAGATTCGAACGAGAGTGGAAAAGTGGTTAGAGTCTCCTTTTATACTCGACCTTGATCGTCACTTTGACCCGTTAAGTAGTGTGGCAATGATAAGTTCACCACGGTTCAATATGTATGGGAATGAATTCGGGCTGGGTAAAGCAGTGGCTGTTTTGTGTGGTTATGCAAACAAATGTGATGGGAATGTGACTGCATGTGAGGGAGATGAAGGAGGAGGAGGGGGTATGGATTTGGATATTTCTCTTTCTTCAAATGTTATGAGGGAGTTGGAATTGGATGAAAACTTTATGAATGCAGTTTCTGTGACCAATATATGA 1377 0.4118 MMTSSSVQHVSECFIKPLHPIPDSNRICHLTTWDIARSSMNYIQKGLLFKKPNNQQDFIDNLLEKLKQSLSLALFHFYPLSGRIVTQKSQDPPSYSIFVDCSNNNPGAKFIYATLDVTVSDILAPIDVPPFVKSLFDLNKAVNHDGHTLPLLSVQVTELVDGVFIGCSMNHYIGDGTSYWKFFNTWSEIFQAQGQGYEHDVPISCQPFHNRWFPEGYGPPINLPFKHHDEFVSRFESPKLRERIFHFTSESIAKLKAKANKECNTNKISSFQSLSAHVWRSITRARRLANDRKTNCMVAVNNRPRMKPPLSEEYFGTSVDTVNAEATAGELLENDLGWAAWKVHVAVTKHDDLEIRTRVEKWLESPFILDLDRHFDPLSSVAMISSPRFNMYGNEFGLGKAVAVLCGYANKCDGNVTACEGDEGGGGGMDLDISLSSNVMRELELDENFMNAVSVTNI 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01900 458 Gene3D - 2 218 IPR023213 -
Vivi3g01900 458 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 451 - -
Vivi3g01900 458 Gene3D - 227 445 IPR023213 -
Vivi3g01900 458 Pfam Transferase family 7 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01900 Vivi-Chr3 30887444 30889543 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01900 49 402 Monolignol Biosynthesis Gene Families AT5G48930 30.645 9.47e-41 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01900 - - lja:Lj1g3v1664450.1 649.047