Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01896 ATGATGACTTCCTCAACTGTCCAACATGTTTCAGAATGTTTCATCAAACCACTACACCCTATTCCAGATTCAAACCGAATCTGCCATTTGACAACATGGGATATTGCCATGTCGACTATGAACTACATCCAGAAAGGCCTCTTGTTCAAAAAACCAAATAACCAACAAGATTTCATCGATAATCTGTTGGAGAAGCTCAAACACTCGCTCTCTCTTGCACTATTCCATTTCTATCCTCTATCTGGCCGTCTTGTTACACAAAAATCTCAAGACCTTCCATCTTATTCTATTTTCGTCGATTGCAGTAATAATAACCTTGGAGCTAGGTTCATCTACGCAACTTTGCATGTAACCATATCTGATATCCTTGCCCCAATTGATGTTCCACCGGTTGTTAAGTCATTGTTTGATCTCAATAAAGCAATCAATCACGACGGTCACACCTTGCCTTTGTTATCCATCCAAGTGACTGAGCTAGTAGATGGTGTTTTCATAGGTTGTTCCATGAATCACTATATTGGTGATGGAACTTCTTATTGGAAGTTCTTTAACACATGGTCTGAAATATTTCAAGCTCAAGGCCAAGGCTATGATCATGAAAATGTTCCCATTTGGCACCAACCCTTTCACACTCGTTGGTTTCCCGAAGGTTATGGTCCACCAATCAATCTTCCATTCAAACATCACGACGAGTTTGTAAGCAGATTTGAATCACCCAAGCTGAGAGAGAGAATCTTCCACTTTACAGCAGAGTCTATTGCAAAACTGAAAGCAAAGGCTAATAGGGAGTGTAATACAAACAAAATCTCTTCGTTCCAATCCTTATCAGCACATGTTTGGAGAAGTATAACTCGTGCCCGCTGCCTAGCAAATGATAGAAAAACAAATTGTATGGTGGCTATAAACAACCGGCCGAGAATGAAACCGCCTCTTCCTGAAGAGTACTTTGGGACCTCAGTTGATACAGTGAGTGCAGAAGCAACGGCAGGAGAATTGCTTGAGAATAGTTTGGGATGGGTAGCATGGAGGGTTCATGTTGCTGTTACAAAGCATGATGACTTAGAGATTCGAAAGGGTGTGGAAAAGTGGTTAGAGTCTCCTGTTATACTCGACCTTAACCGTCACTTTGATCCGTTAAGCAGTGTGGCAATGATAAGTTCACCACGGTTCAATATGTATGGGAATGAATTTGGGATGGGTAAAGCAGTGGCTGTTTTGTGTGGTTATGCAAACAAATGTGATGGGAATGTGACTGCATATGAGGGATATGAAGGAGGAGGGAGTATGGATTTGGAAATTTCACTTTCTTCAAATGTTATGACAGAATTGGAATTGGATGACAACTTTATGAATGCAGTTTCTGTGACCAATATGTTAGGTACTTCAAGAGGACACACTCTTAATGAAAATTAA 1413 0.4062 MMTSSTVQHVSECFIKPLHPIPDSNRICHLTTWDIAMSTMNYIQKGLLFKKPNNQQDFIDNLLEKLKHSLSLALFHFYPLSGRLVTQKSQDLPSYSIFVDCSNNNLGARFIYATLHVTISDILAPIDVPPVVKSLFDLNKAINHDGHTLPLLSIQVTELVDGVFIGCSMNHYIGDGTSYWKFFNTWSEIFQAQGQGYDHENVPIWHQPFHTRWFPEGYGPPINLPFKHHDEFVSRFESPKLRERIFHFTAESIAKLKAKANRECNTNKISSFQSLSAHVWRSITRARCLANDRKTNCMVAINNRPRMKPPLPEEYFGTSVDTVSAEATAGELLENSLGWVAWRVHVAVTKHDDLEIRKGVEKWLESPVILDLNRHFDPLSSVAMISSPRFNMYGNEFGMGKAVAVLCGYANKCDGNVTAYEGYEGGGSMDLEISLSSNVMTELELDDNFMNAVSVTNMLGTSRGHTLNEN 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01896 470 Gene3D - 2 218 IPR023213 -
Vivi3g01896 470 Pfam Transferase family 7 447 - -
Vivi3g01896 470 Gene3D - 228 445 IPR023213 -
Vivi3g01896 470 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01896 Vivi-Chr3 30866363 30868434 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01896 49 444 Monolignol Biosynthesis Gene Families AT5G48930 30.340 3.20e-41 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01896 - - lja:Lj1g3v1664450.1 664.455