Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01889 ATGGCAGCAAAGAGAAACCACTCAACCAAATGGATAATCCTCTCACTCTTACTACTCATGAAAACTTCATTCTCCAACTCCTCCAAACTCAAAACCACACCCTCGCCTCTCTCAGATCCTACTTCCCTCTTAGCATTCAAATCAAAAGCTGACATAAACAACCACCTCAACTTCACCACCAAAACCCATTTCTGTAACTGGGAAGGTGTAGAATGCAACGGACCCAAAGTAGTCCGTCTCGTTCTTCGAAGCTTAGATCTCGGCGGCGTCTTCGCCCCTCACACATTAACCTTCCTCGACCAGCTCCGCGTTCTCAGTCTACAGAACAACTCTCTCACCGGAGCCATACCTGACCTCTCTGGTCTCTTCAATCTCAAAACGCTCTTCCTTGATAACAACCACTTCACTGGTTCACTTCCAGTTTCTCTTTTCTCTCTTCACAGAATAAAAACTATAGATTTCTCTCACAACAATCTCTCTGGAGCTATACCTGTAGATTTCATAAACCTCGACCGTCTTTATTACCTTCGTTTAAGCTTCAACGCTTTCAACGGTACTATTCCTCCTTTTAATCAGTCTACTATCCGAACTTTTGATGTCTCCGGTAACAATCTCTCCGGCGCAGTTCCGTTAACCACCGCGCTTTCTCGTTTTCAGCCGTCTTCTTTCGCTTTAAACCCTAATCTCTGCGGAGAAATCATTCGGAAAGAATGTCGTCCAACTACGCCGTTCTTTGCTCCTACCTCGCCTCCGGCTGTTGGAATCGGTCAGAGCGCGGATGTTCACGGTTTAATCCGGCAGCCGTACGAGAAACACAAACACAATCGGAAAGCGGTGATAATCGGGTTCTCCGCCGGAATAATGTTTCTAATACTTTCCTTGACGTGTTTCGCGGTGGTGGTTAAGAAACAGAGGAAGAAGAAAGGTAAAGGCTCTTCCGGTTCAAGCGTGATGGCTTCGGATGCGGCGGCGACGGCGGAAGCTGCGGTTGTGATGCAAATGGAGCAAGAGAGGGAGTTAGAGGAAAAGGTGAAAAGAGCTCAAGTTGCGAAGAGTGGTAGTTTAATATTCTGTGCGGGTGAGTCGCAGGTGTATACGCTGGACCAGTTGATGAAAGGCTCTGCGGAGCTTTTAGGTAGAGGGTGTTTGGGTACAACTTACAAAGCTGTGTTGGATAACCGTTTGATTGTAACAGTGAAGCGGTTTGATTGTGGGAAAATGGGTGGACACGTAAGCAAAGAAGTGTTCGAGCGTCACATGGAATCAGTTGGTGGACTTCGTCATCCAAATTTGGTTCCTTTAAGGGCTTATTTTCAAGCAAATCATGAGAGACTTATTATCTATGATTATCAACCCAATGGGAGTTTATTCTCCCTCATACATGGTTCCAGATCAAGCAGGGCAAGGCCATTGCACTGGACGTCATGCTTAAAAATAGCAGAGGATGTAGCACAAGGGCTTTCTTACATCCACCAGGCATGGAGACTGGTCCATGGCAATCTCAAATCCACTAACGTTCTCCTAGGACCCGATTTCGAGGCTTGTGTCACAGACTACTGCCTGTCTGTGTTGACTAATCCATCTACCTTTGACGAGGTTGGTGATTCGGCACCCTATAGAGCTCCAGAGACTCGCAATCCAAATCACCAGCCGACCCCCAAATCCGACGTTTACGCATATGGTATTTTGTTACTAGAGCTTCTGACGGGGAAATATGCTTCCGAGCTCCCATTCATGGTGCCGGGTGATATGTCAAAATGGGTGAGATCAATCAGGGACGACAATGGGAGCGAAGACAACAGAATGGATATGCTTCTTCAGGTGGCTACAACTTGTAGCTTGATCTCTCCTGAGCAGAGACCCACAATGTGGCAGGTCTTGAAGATGTTACAGGAAATCAAAGAGATTGTACTATTGGAGGATAGCGAAGTCGATGTACGCAATAGTAATGCCGTTGCCCTGTCTTAG 1968 0.467 MAAKRNHSTKWIILSLLLLMKTSFSNSSKLKTTPSPLSDPTSLLAFKSKADINNHLNFTTKTHFCNWEGVECNGPKVVRLVLRSLDLGGVFAPHTLTFLDQLRVLSLQNNSLTGAIPDLSGLFNLKTLFLDNNHFTGSLPVSLFSLHRIKTIDFSHNNLSGAIPVDFINLDRLYYLRLSFNAFNGTIPPFNQSTIRTFDVSGNNLSGAVPLTTALSRFQPSSFALNPNLCGEIIRKECRPTTPFFAPTSPPAVGIGQSADVHGLIRQPYEKHKHNRKAVIIGFSAGIMFLILSLTCFAVVVKKQRKKKGKGSSGSSVMASDAAATAEAAVVMQMEQERELEEKVKRAQVAKSGSLIFCAGESQVYTLDQLMKGSAELLGRGCLGTTYKAVLDNRLIVTVKRFDCGKMGGHVSKEVFERHMESVGGLRHPNLVPLRAYFQANHERLIIYDYQPNGSLFSLIHGSRSSRARPLHWTSCLKIAEDVAQGLSYIHQAWRLVHGNLKSTNVLLGPDFEACVTDYCLSVLTNPSTFDEVGDSAPYRAPETRNPNHQPTPKSDVYAYGILLLELLTGKYASELPFMVPGDMSKWVRSIRDDNGSEDNRMDMLLQVATTCSLISPEQRPTMWQVLKMLQEIKEIVLLEDSEVDVRNSNAVALS 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01889 655 Gene3D Transferase(Phosphotransferase) domain 1 452 649 - -
Vivi3g01889 655 Gene3D Ribonuclease Inhibitor 193 242 IPR032675 -
Vivi3g01889 655 Pfam Protein kinase domain 376 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g01889 655 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 634 IPR046959 -
Vivi3g01889 655 ProSiteProfiles Protein kinase domain profile. 372 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g01889 655 Pfam Leucine rich repeat 124 182 IPR001611 GO:0005515
Vivi3g01889 655 SUPERFAMILY Protein kinase-like (PK-like) 376 631 IPR011009 -
Vivi3g01889 655 Gene3D Phosphorylase Kinase; domain 1 338 450 - -
Vivi3g01889 655 Gene3D Ribonuclease Inhibitor 37 192 IPR032675 -
Vivi3g01889 655 ProSiteProfiles Leucine-rich repeat profile. 101 123 IPR001611 GO:0005515
Vivi3g01889 655 FunFam Nuclear pore complex protein NUP107 37 189 - -
Vivi3g01889 655 SUPERFAMILY L domain-like 39 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01889 Vivi-Chr3 30823363 30826965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01889 39 651 Receptor kinase-like Gene Family AT5G43020 58.070 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vivi3g01889 Pkinase 2.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01889 - - cam:101511242 1098.19