Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01884 ATGGTGATGGAAGAAGAAAGAGAGTGTTGTTCAACAATAATAAGAAACAACAACATCAACCCCAAAGAGAATCACAAACAAGAGAAACCATACAGAGGAATAAGGAAAAGAAAGTGGGGAAAGTGGGTTGCAGAAATAAGAGAACCAAACAAAAGATCAAGAATCTGGTTAGGTTCTTACACCACCCCCGTAGCCGCCGCACGTGCCTACGACACCGCCGTGTTCTACCTAAGAGGTCCGACCGCTCGCCTTAATTTCCCCGAATTATTGTTCCAAGACGACGAAGACAACATCAACAACAACAACAAAGACGGTTCTGTTCCACAAGGTAACATGTCCGCTGATTCAATACGTAAGAAAGCCACCACGGTCGGTGCTAGAGTTGATGCTCTTCAAACCGCTCTTCAAGCTTCATCGCGTTCTAGTTCTACTTCTACTCCATTTAACTCTGATGTTAAACCTGATTTGAACGAGTTTCCAAAACCTGAAGATTATTAA 498 0.4317 MVMEEERECCSTIIRNNNINPKENHKQEKPYRGIRKRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELLFQDDEDNINNNNKDGSVPQGNMSADSIRKKATTVGARVDALQTALQASSRSSSTSTPFNSDVKPDLNEFPKPEDY 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01884 165 Pfam AP2 domain 31 79 IPR001471 GO:0003700|GO:0006355
Vivi3g01884 165 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Vivi3g01884 165 MobiDBLite consensus disorder prediction 134 165 - -
Vivi3g01884 165 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Vivi3g01884 165 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Vivi3g01884 165 CDD AP2 31 89 IPR001471 GO:0003700|GO:0006355
Vivi3g01884 165 PRINTS Ethylene responsive element binding protein signature 69 89 IPR001471 GO:0003700|GO:0006355
Vivi3g01884 165 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Vivi3g01884 165 Gene3D AP2/ERF domain 30 88 IPR036955 GO:0003700|GO:0006355
Vivi3g01884 165 MobiDBLite consensus disorder prediction 134 152 - -
Vivi3g01884 165 FunFam Ethylene-responsive transcription factor 2 29 88 - -
Vivi3g01884 165 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 14 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01884 Vivi-Chr3 30712032 30712858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01884 6 151 AP2-EREBP Transcription Factor Family AT1G46768 58.667 1.30e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi3g01884 AP2 9.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01884 K09286 - gmx:100801528 195.282