Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01883 ATGGCGCAAGTTCACGAGACTTCCAACAATGACGCTGCTGCTCCGGTTCCAAATCATCTCACTACGACGTCGCTGTACGTCGGAGATCTCGATCATGACGTCAATGATTCGCAGATTTATGATCTTTTCAATCAGATCGGTCAGGTTGTTTCTGTTCGGATCTGTAGGGATTTGGCTTCTCAGCAATCCCTAGGTTACGGTTACGTCAATTTCAGTAACCCTCATGACGCTGCAAAGGCTATGGATGTGCTGAATTTCACTCCACTGAACAACAAACCGATTCGGATAATGTATTCTCACCGGGACCCCAGTGTTCGCAAGAGTGGTGCTGCCAATATTTTCATCAAGAATTTGGATAAGGCAATTGATCACAAGGGTTTGTACGACACTTTTTCGGTTTTTGGGAGTATTCTCTCTTGCAAGATAGCAATGGATGCTTCTGGCCTGTCTAAAGGCTATGGTTTTGTGCAATTTGAGAATGAGGAATCTGCGCAAAGTGCAATTGATAAGTTAAACGGCATGCTGATCAATGATAAGCCTGTTTATGTTGGCCATTTCCAACGGAAGCAGGATAGAGATAACACCTTGAGTACTGCTAAGTTTAATAATGTTTATGTGAAAAATCTATCAGAGGCGATTGCTGACGATGACTTGAAGAACATTTTTGGAGAATATGGAACTATTACTAGTGCTGTAGTAATGAGAGATGTAGATGGTAAATCAAAATGTTTTGGTTTTGTCAATTTTGAAAATGCAGATGCTGCTGCTAAAGCTGTGGAGGCACTTAATGGAAAGAAATTTGATGACAAGGAGTGGTATGTTGGAAAAGCCCTGAAAAAGTATGAAAGGGAACTTGAACTGAAAGAAAGACATGAGCAGGCTATAAAGGAAACTGTGGACAAATATTATGGTGCCAACTTGTATCTCAAAAACTTGGATGATAATGTCAGCGATGAAAAACTTAGCGAACTCTTCTCCGAGTTTGGTACAGTAACTTCATGCAAGATTCTGCGAGATCCACAGGGAATCAGTAGGGGATCTGGATTTGTTGCTTTTTCAACTCCTGAGGAAGCAACTAGAGCTCTTGCTGAGATGAATGGAAAAATGGTTGCTGGCAAACCTCTCTATGTTGCTCCTGCACAGAAAAAGGAAGAGAGAAAAGCTAGGTTACAGGCACAGTTTTCGCAAGTGAGGCCGGTTGCAATGGCTCCTATTGCGCAGCGAATGCCATTTTACCCTGGGGGAGTTCCAGGGATGGGACAACAACTCATGTATGGCCAAGCTCCTCCAGCCTTCATATCTCAGGCTGGATTTGGTTACCCACAGCAACTGGTTCCTGGAATGAGACCAGGTGGTGCTCCAATGCCAAACTTCTTTGTGCCCATGGGTCAGCAGGGTCAACAAGGTCAGCGTCCTGGCGGACGGCGAGGTGCAGGTCCTATTCATCAACTCCCGCAGTCATTGCCAATGATGCAGCAACAGATGCTTCCAAGGGGACGTGTCTACCGATACCCTCCTCCTGGTCGCAACCTGCAAGGTATTCCGCTGCCAGGAGTAACAGGAGGAACACCCATTCAGGCTCTGGCTACAGCCCTTGCAAATGCTCCTCCTGAACAGCAGAGGACCATGCTTGGTGAAGTTTTATACCCCCTAGTAGAAAAGATTGAACATGGTGGAGCTGCGAAGGTTACTGGGATGCTTTTGGAAATGGACCAGCCTGAGGTGTTACATCTGATTGAGTCACCAGAGGCTCTCAAGACTAAAGTTGCTGAGGCCGTGGAAGTGCTGAGAAATGTTGCACAGCAGCAATCAAACAGCCCAGCTGATCAACTGGCTTCTCTCTCTCTTAATGACAATCACGAGTCTTAG 1869 0.4559 MAQVHETSNNDAAAPVPNHLTTTSLYVGDLDHDVNDSQIYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDKAIDHKGLYDTFSVFGSILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLINDKPVYVGHFQRKQDRDNTLSTAKFNNVYVKNLSEAIADDDLKNIFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAKAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQAIKETVDKYYGANLYLKNLDDNVSDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQKKEERKARLQAQFSQVRPVAMAPIAQRMPFYPGGVPGMGQQLMYGQAPPAFISQAGFGYPQQLVPGMRPGGAPMPNFFVPMGQQGQQGQRPGGRRGAGPIHQLPQSLPMMQQQMLPRGRVYRYPPPGRNLQGIPLPGVTGGTPIQALATALANAPPEQQRTMLGEVLYPLVEKIEHGGAAKVTGMLLEMDQPEVLHLIESPEALKTKVAEAVEVLRNVAQQQSNSPADQLASLSLNDNHES 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01883 622 SMART rrm2_1 24 97 IPR003954 GO:0003676
Vivi3g01883 622 SMART rrm2_1 306 378 IPR003954 GO:0003676
Vivi3g01883 622 SMART rrm2_1 203 275 IPR003954 GO:0003676
Vivi3g01883 622 SMART rrm2_1 112 184 IPR003954 GO:0003676
Vivi3g01883 622 Gene3D - 290 395 IPR012677 -
Vivi3g01883 622 Gene3D - 192 289 IPR012677 -
Vivi3g01883 622 CDD RRM4_I_PABPs 304 382 - -
Vivi3g01883 622 PANTHER RNA BINDING PROTEIN 22 85 - -
Vivi3g01883 622 Gene3D - 2 104 IPR012677 -
Vivi3g01883 622 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 24 597 IPR006515 GO:0003723
Vivi3g01883 622 CDD RRM2_I_PABPs 109 185 IPR045305 -
Vivi3g01883 622 SMART rrm1_1 203 275 IPR000504 GO:0003723
Vivi3g01883 622 SMART rrm1_1 24 97 IPR000504 GO:0003723
Vivi3g01883 622 SMART rrm1_1 306 378 IPR000504 GO:0003723
Vivi3g01883 622 SMART rrm1_1 112 184 IPR000504 GO:0003723
Vivi3g01883 622 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 524 601 IPR002004 GO:0003723
Vivi3g01883 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 101 IPR000504 GO:0003723
Vivi3g01883 622 SMART poly_2 536 599 IPR002004 GO:0003723
Vivi3g01883 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 188 IPR000504 GO:0003723
Vivi3g01883 622 Coils Coil 278 301 - -
Vivi3g01883 622 SUPERFAMILY RNA-binding domain, RBD 304 397 IPR035979 GO:0003676
Vivi3g01883 622 FunFam Polyadenylate-binding protein 10 111 - -
Vivi3g01883 622 CDD RRM1_I_PABPs 24 103 IPR034364 -
Vivi3g01883 622 FunFam Polyadenylate-binding protein 288 393 - -
Vivi3g01883 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 382 IPR000504 GO:0003723
Vivi3g01883 622 Pfam Poly-adenylate binding protein, unique domain 532 596 IPR002004 GO:0003723
Vivi3g01883 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 279 IPR000504 GO:0003723
Vivi3g01883 622 SUPERFAMILY RNA-binding domain, RBD 199 284 IPR035979 GO:0003676
Vivi3g01883 622 FunFam Polyadenylate-binding protein 520 602 - -
Vivi3g01883 622 SUPERFAMILY RNA-binding domain, RBD 23 192 IPR035979 GO:0003676
Vivi3g01883 622 Gene3D - 521 603 - -
Vivi3g01883 622 MobiDBLite consensus disorder prediction 601 622 - -
Vivi3g01883 622 FunFam Polyadenylate-binding protein 112 185 - -
Vivi3g01883 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 272 IPR000504 GO:0003723
Vivi3g01883 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 181 IPR000504 GO:0003723
Vivi3g01883 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 375 IPR000504 GO:0003723
Vivi3g01883 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 95 IPR000504 GO:0003723
Vivi3g01883 622 FunFam Polyadenylate-binding protein 192 287 - -
Vivi3g01883 622 Gene3D - 105 191 IPR012677 -
Vivi3g01883 622 SUPERFAMILY PABC (PABP) domain 488 614 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01883 Vivi-Chr3 30692895 30698085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01883 22 619 Eukaryotic Initiation Factors Gene Family AT1G49760 64.800 0.0 779
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01883 K13126 - gmx:100784442 910.212