Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01878 ATGAGCACCCCTTCTCTAAAACTTGTTTCTGCATGTTTCATCAAACCATATCCCCCAATCCAAGACTCAAACCAAATATGCTACTTATCATCTTGGGATATTTGCATGTTATCTGCAAACTATATCCAAAAGGGTCTTCTCTTCAAAAAACCAACATCATCACCAAACCAACAACATTTCATTGACAACCTGGTGGACAAACTCAAACACTCTCTTTCTCTCACACTTTTCCATTTCTATCCCCTCTCTGGTCGTCTTGTTACACACAAAACCCAACACCCTCCTTCCTATACTGTTTTTATCGACTGCAAAAATAGTCCTGGTGCTAAATTTACCCATGCAACGTTAGATATAACCGTAAATGATATCCTCTCCCCTATTGATGTCCCACCCATTGTTCATTCCTTCTTTGATCACCACAAAGCAGTTAACCATGATGGTCACACCATGTCTTTGTTGTCTATTCAAGTCACTGAATTATTAGATGGTGTTTTCATAGGTTGTTCCATGAACCACTCTCTTGGTGATGGAACTGCTTATTGGAATTTCTTTAACACACTTTCTAAAACATTTCAGAATAGCACTAATACTATTCCTCTTTCAGTTTCACACCAACCTATCCATAATAGATGGTTTCCTGAAGGTTATGGTCCAATTATCAACCTTCCTTTCAAACATCACGACGAGTTTATTCACATGTATGAAGCACCTATTATGAGAGAGAGATTCTTTCATTTCTCAGCCGAGTCTATAGCGAAACTTAAAGCAAAGGCAAACAAAGAGTCTAACACAACAAAAATCTCTTCTTTCCAATCATTATCGGCACTAGTCTGGAGATCTATAACACGTGCACGTCAACTACAACATGATCATATAACTACATGCAAATTGGCTATAAACAACCGAATGAGAATGGAACCGCCACTTCCTAAGGAATATTTTGGAAATTCCATTCATACACTGAGTACTGAAACAACTGTAAGGGAATTGCTGGAGAATGATATAGGATGGGCAGCTTGGAAGATTCATCTGGCTGTTGTAAATCATGAAGACAAAGTGGTGCGGGGATTGGTGGAAAAGTGGTTAAAGTCTCCTTATGTGTATAGATTAGATACGTTCTTTGATCCTAATACAGTTATGATGGGTAGTTCACCGAGGTTTAATATGTATGGAAATGAATTTGGAATGGGAAAAGCATTGGCAGTTAGAAGTGGGTATGCTAACAAATTTGATGGAAAAATAACATCATATCCAGGACAGGAAGGAGGAGGGAGCATAGATCTTGAAGTGTGTCTTTCACCGGATACTATGATGGTTCTAGAATCAGATGAAGAGTTCATGAATTCAGTTTCAGTGTTTAATCCATTGTTCTAG 1374 0.3828 MSTPSLKLVSACFIKPYPPIQDSNQICYLSSWDICMLSANYIQKGLLFKKPTSSPNQQHFIDNLVDKLKHSLSLTLFHFYPLSGRLVTHKTQHPPSYTVFIDCKNSPGAKFTHATLDITVNDILSPIDVPPIVHSFFDHHKAVNHDGHTMSLLSIQVTELLDGVFIGCSMNHSLGDGTAYWNFFNTLSKTFQNSTNTIPLSVSHQPIHNRWFPEGYGPIINLPFKHHDEFIHMYEAPIMRERFFHFSAESIAKLKAKANKESNTTKISSFQSLSALVWRSITRARQLQHDHITTCKLAINNRMRMEPPLPKEYFGNSIHTLSTETTVRELLENDIGWAAWKIHLAVVNHEDKVVRGLVEKWLKSPYVYRLDTFFDPNTVMMGSSPRFNMYGNEFGMGKALAVRSGYANKFDGKITSYPGQEGGGSIDLEVCLSPDTMMVLESDEEFMNSVSVFNPLF 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01878 457 Pfam Transferase family 12 447 - -
Vivi3g01878 457 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 448 - -
Vivi3g01878 457 Gene3D - 232 442 IPR023213 -
Vivi3g01878 457 FunFam Tryptamine hydroxycinnamoyl transferase 225 443 - -
Vivi3g01878 457 Gene3D - 6 220 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01878 Vivi-Chr3 30635384 30636938 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01878 48 441 Monolignol Biosynthesis Gene Families AT5G48930 27.594 5.25e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01878 - - gmx:100787228 689.493