Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01877 ATGAGTATCCCTTCCATAAAACTTGTTTCTGCATGTTTCATCAAACCATATCCCTCAATCCAAGACTCAAACCAAATATGGTATTTATCACCTTGGGACATTCGCATGTTATCTGTAAACTATATCCAAAAGGGCCTTCTCTTCAAAAAACCAACGACATCACAAAACCAACAACATTTCATCAACAAGCTCAAACACTCTCTTTCTCTAACACTTTTCCATTTCTATCCTCTCTCAGGTCGTCTAGTTACGCATAAAACTCTAGTTCCCCCTTCTTACACTGTTTTTGTCGATTGCAAAAACAGTCCTGGAGCTAAATTTATCCATGCAACTTTAGATATCACCATAAATGAAATCCTCTCCCCCATTGATGTCCCACCCATTGTTCATTCCTTCTTTGATCACCACAAAGCAGTCAACCATGATGGTCACACCATGTCTTTGTTGTCTATTCAAGTCACTGAATTATTAGATGGTGTTTTTATAGCTTGTTCCATGAACCACTCTCTTGGTGATGGAACTGCTTATTGGAATTTCTTTAACTCATTTTCTAAAATATTTCAAAATGACACTAATACTAATCCTGTTTCAATTTCACACCAGCCCATCCATAATAGATGGTTTCCAGATGGTTATGGTCCAATTATCAACCTTCCTTTCAAACATCGCGACGAGTTTATTCAAAGATATGAAGCACCCATTTTGAAAGAGAGGTTCTTCCGTTTTTCAGCAGAGTCTATAGGAAAGCTTAAAGCAAAGGCAAACAAAGAGTTTAAGACAACGAAAATCTCTAGTTTCCAATCATTATCGGCACTAGTTTGGAGATCTATAACTCGTGCTCGACAACTTCAACATGACCAGACAACAACTTGTAAGTTGGCTATAAACAACCGAACGAGAATGGAACCCTCACTTCCTAAGGAATATTTCGGGAATTCAATTCATACATTGAGTACTGAAACAACTGTAAGGGAATTGCTGGAAAATAATATAGGATGGGCAGCTTGGAAGATTCATATGGCTATTGCAAATCATGACAACAAAGTGGTGCGAGGATCGGTGGAAGAGTGGTTACGTTCTCCTTATGTGTATCGAATGGATCTGTTCTTTGATCCTAATACAGTTATGATGGGTAGTTCACCGAGGTTTAATATGTATGGGAATGAGTTTGGAATGGGAAAAGCAATGGCAGTTAGAAGTGGATATGCTAACAAATGTGATGGAAAAATAACATCATATCCAGGACAAGAAGGAGGAGGGAGCATAGATCTCGAAGTGTGTCTTTCACCAGACAAAATGATGGTCCTGGAATCAGATGAAGAGTTCATGAGTTCAGTTTCAGTATTTAATACATTGCTCTAG 1362 0.3825 MSIPSIKLVSACFIKPYPSIQDSNQIWYLSPWDIRMLSVNYIQKGLLFKKPTTSQNQQHFINKLKHSLSLTLFHFYPLSGRLVTHKTLVPPSYTVFVDCKNSPGAKFIHATLDITINEILSPIDVPPIVHSFFDHHKAVNHDGHTMSLLSIQVTELLDGVFIACSMNHSLGDGTAYWNFFNSFSKIFQNDTNTNPVSISHQPIHNRWFPDGYGPIINLPFKHRDEFIQRYEAPILKERFFRFSAESIGKLKAKANKEFKTTKISSFQSLSALVWRSITRARQLQHDQTTTCKLAINNRTRMEPSLPKEYFGNSIHTLSTETTVRELLENNIGWAAWKIHMAIANHDNKVVRGSVEEWLRSPYVYRMDLFFDPNTVMMGSSPRFNMYGNEFGMGKAMAVRSGYANKCDGKITSYPGQEGGGSIDLEVCLSPDKMMVLESDEEFMSSVSVFNTLL 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01877 453 FunFam Tryptamine hydroxycinnamoyl transferase 221 439 - -
Vivi3g01877 453 Gene3D - 227 438 IPR023213 -
Vivi3g01877 453 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 444 - -
Vivi3g01877 453 Gene3D - 6 215 IPR023213 -
Vivi3g01877 453 Pfam Transferase family 18 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01877 Vivi-Chr3 30523917 30525994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01877 48 437 Monolignol Biosynthesis Gene Families AT5G48930 25.178 8.72e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01877 - - gmx:100787228 660.603